New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 939313	64 (1.060)	3 (0.050)	3/252	NT	5.0%	coding (6309/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 939353	53 (0.930)					coding (6269/18933 nt)	PP_0806	surface adhesion protein

TGACGGCAGCTGGCGGCGTGACGTCCGGTGCAGTGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGA  >  NC_002947/939207‑939494                                                                                                                                                   |                                                                                                                                              tGACGGCAGCTGGCGGCGTGACGTCCGGTGCAGTGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCGTGGGCGGGGAACAGCGTGACGCCGAAGGTGCCGTCTTCGTTGAc                                                                                                                                              <  4:43400‑M2/148‑2 (MQ=255)             gcggcgTGACGTCCGGTGCAGTGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGcc                                                                                                                                  >  6:30448/1‑148 (MQ=255)               ggcgTGACGTCCGGTGCAGTGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGAt                                                                                                                               >  8:50744/1‑149 (MQ=255)                gcgTGACGTCCGGTGCAGTGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGAt                                                                                                                               >  1:191268/1‑148 (MQ=255)                                 gTGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATc                                                                                                             >  7:721/1‑149 (MQ=255)                                  tGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATcg                                                                                                            >  1:191210/1‑149 (MQ=255)                                  tGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGACGGTGGCATcg                                                                                                            >  5:69527/1‑149 (MQ=255)                                       gCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGAc                                                                                                       <  8:721/149‑1 (MQ=255)                                       gCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGAc                                                                                                       <  3:266635/149‑1 (MQ=255)                                          aGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTg                                                                                                    >  4:260854/1‑149 (MQ=255)                                              gcgTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACg                                                                                                >  1:355880/1‑149 (MQ=255)                                                gTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGt                                                                                              <  3:216814/149‑1 (MQ=255)                                                   gAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGt                                                                                              <  3:37096/146‑1 (MQ=255)                                                   gAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGt                                                                                              >  4:37096/1‑146 (MQ=255)                                                       tGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGc                                                                                                                >  2:368424/1‑124 (MQ=255)                                                       tGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGc                                                                                                                <  1:368424/124‑1 (MQ=255)                                                         ttGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCg                                                                                       <  4:304845/147‑1 (MQ=255)                                                         ttGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCg                                                                                       <  6:5826/147‑1 (MQ=255)                                                             cggcggCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGt                                                                                              >  2:322250/1‑136 (MQ=255)                                                             cggcggCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGt                                                                                              <  1:322250/136‑1 (MQ=255)                                                              ggcggcGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTcgc                                                                                >  2:376427/1‑149 (MQ=255)                                                               gcggcgTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTcgcc                                                                               <  7:217079/149‑1 (MQ=255)                                                                      cTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGCCCAGGCCTGTGCCGATCAGGCTGCCGGTGGAATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCCCGGCCg                                                                        >  5:16126/1‑149 (MQ=255)                                                                        aCCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGt                                                                      >  3:25748/1‑149 (MQ=255)                                                                         ccACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGt                                                                      >  6:234329/1‑148 (MQ=255)                                                                          cACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCg                                                                                                                     <  6:233630/100‑1 (MQ=255)                                                                          cACGCGAATGTCCAGTGCTTCACCATTGCCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCg                                                                                                                     >  5:233630/1‑100 (MQ=255)                                                                            cgcgAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAg                                                                  <  7:50744/149‑1 (MQ=255)                                                                               gAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGt                                                                >  4:290159/1‑148 (MQ=255)                                                                                aaTGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTca                                                              <  2:191268/149‑1 (MQ=255)                                                                                 aTGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTcac                                                             <  2:191210/149‑1 (MQ=255)                                                                                  tGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGa                                                                                                        >  4:119040/1‑105 (MQ=255)                                                                                  tGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGa                                                                                                        <  3:119040/105‑1 (MQ=255)                                                                                     ccAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGCCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCAcccc                                                          >  4:176068/1‑148 (MQ=255)                                                                                      cAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCAt                                                        >  7:166075/1‑149 (MQ=255)                                                                                        gTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCg                                                      <  2:281283/149‑1 (MQ=255)                                                                                            ttCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATc                                                   >  3:290261/1‑148 (MQ=255)                                                                                               aCCATTGGCGTGGGCGGGGAACAGCGTGACGCCGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAg                                                <  3:43400/148‑1 (MQ=255)                                                                                               aCCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAg                                                <  3:290159/148‑1 (MQ=255)                                                                                                ccATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGc                                              <  2:355880/149‑1 (MQ=255)                                                                                                 cATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGAccaggccaatggtgaagcactggacattcgcgtggtagacgccgccggcaacagttcaacgccgctggcgttcactgcaccggacgtcacgccgccag                                             <  4:161484‑M2/149‑99 (MQ=255)                                                                                                 cATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGTTGCAACCGGCCTCGCCGCGGCCGGGCATGGGCCCACAAACGAACAAGGca                                             >  7:116754/1‑148 (MQ=255)                                                                                                 cATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGc                                              >  4:145744/1‑148 (MQ=255)                                                                                                  aTTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGc                                              >  6:72858/1‑147 (MQ=255)                                                                                                       ccTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCg                                       >  5:298461/1‑149 (MQ=255)                                                                                                       ccTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCg                                       >  7:67842/1‑149 (MQ=255)                                                                                                          gggCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGAccaggccaatggtgaagcactggacattcgcgtggtagacgccgccggcaacagttcaacgccgctggcgttcactgcaccggacgtcacgc                                                   >  7:87756‑M2/1‑42 (MQ=255)                                                                                                          gggCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGAccaggccaatggtgaagcactggacattcgcgtggtagacgccgccggcaacagttcaacgccgctggcgttcactgcaccggacgtcacgc                                                   <  8:87756‑M2/134‑93 (MQ=255)                                                                                                           ggCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGTGATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGtt                                    <  3:176068/148‑1 (MQ=255)                                                                                                           ggCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTg                                   >  2:216439/1‑149 (MQ=255)                                                                                                             cGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTGGc                                 <  5:234329/149‑1 (MQ=255)                                                                                                                   aCAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTGGCTGCGTg                           <  3:260854/149‑1 (MQ=255)                                                                                                                      gCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTGGCTGCGTgggg                        <  2:294042/149‑1 (MQ=255)                                                                                                                            cGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTGGCTGCGTGGGGGCcag                   >  3:123388/1‑148 (MQ=255)                                                                                                                                   ggggCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTGGCTGCGTGGGGGCCAGCAGGTCtg           <  8:67842/146‑1 (MQ=255)                                                                                                                                    gTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTGGCTGCGTGGGGGCCAGCAGGTCtgg          >  2:298994/1‑149 (MQ=255)                                                                                                                                            ttCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCCCACCATCGATCACGGCCAGCTCGGTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGa  >  8:320429/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                              TGACGGCAGCTGGCGGCGTGACGTCCGGTGCAGTGAACGCCAGCGGCGTTGAACTGTTGCCGGCGGCGTCTACCACGCGAATGTCCAGTGCTTCACCATTGGCCTGGGCGGGGAACAGCGTGACGCTGAAGGTGCCGTCTTCGTTGACCAGGCCTGTGCCGATCAGGCTGCCGGTGGCATCGCGGACCTGTACGGTGGCTCCGGGCTCGCCGCGGCCGGTGAAGGTCACACCATCGATCAAGGCCAGCTCGGTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGA  >  NC_002947/939207‑939494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.