New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1257490	55 (0.910)	3 (0.050)	3/252	NT	5.7%	coding (33/567 nt)	dcd	deoxycytidine triphosphate deaminase
	?	NC_002947	= 1257539	47 (0.830)					coding (82/567 nt)	dcd	deoxycytidine triphosphate deaminase

CCGGGACCGGTAATATGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATGCTGGCAGCTTCGTCGATA  >  NC_002947/1257398‑1257686                                                                                                                                              |                                                                                                                                                    ccGGGACCGGTAATATGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCgcggcga                                                                                                                                              >  4:364549‑M2/1‑142 (MQ=255)      aCCGGTAATATGTGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAg                                                                                                                                          >  7:111478/1‑148 (MQ=255)        cGGTAATATGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGa                                                                                                                                        >  5:106071/1‑148 (MQ=255)         ggTAATATGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGAc                                                                                                                                       >  6:137316/1‑148 (MQ=255)          gTAATATGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACaa                                                                                                                                     >  1:53756/1‑149 (MQ=255)               atGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACATGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACcgcg                                                                                                                                <  2:192392/149‑1 (MQ=255)               atGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACcgcg                                                                                                                                >  8:156913/1‑149 (MQ=255)               atGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACcgcg                                                                                                                                <  5:226429/149‑1 (MQ=255)               atGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGAAGGACAACcgcg                                                                                                                                >  8:152893/1‑149 (MQ=255)                tGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGt                                                                                                                               <  4:112765/149‑1 (MQ=255)                  cgcgTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGa                                                                                                                             <  2:53756/149‑1 (MQ=255)                   gcgTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGAt                                                                                                                            >  1:146575/1‑149 (MQ=255)                        aCGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCt                                                                                                                       >  7:279630/1‑149 (MQ=255)                        aCGATTTTCACCTCGAAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCt                                                                                                                       >  6:136640/1‑149 (MQ=255)                              ttCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGc                                                                                                                  <  8:111478/148‑1 (MQ=255)                              ttCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGc                                                                                                                  <  5:308509/148‑1 (MQ=255)                                          ctctTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGTCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATg                                                                                                     <  5:136640/149‑1 (MQ=255)                                              tCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTa                                                                                                 >  7:76897/1‑149 (MQ=255)                                                aGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTac                                                                                                <  3:288493/148‑1 (MQ=255)                                                 ggACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTacga                                                                                              >  4:59058/1‑149 (MQ=255)                                                  gACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTacgac                                                                                             <  1:159572/149‑1 (MQ=255)                                                  gACACCCAGCCATGAGCATCAAATCGGACAAGTGGATTCTCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCTAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTacgac                                                                                             <  5:249203/149‑1 (MQ=255)                                                    cacCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGTAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGt                                                                                           <  7:156913/149‑1 (MQ=255)                                                            cATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCgcggc                                                                                                                                                <  4:48850‑M2/88‑6 (MQ=255)                                                            cATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCgcggc                                                                                                                                                >  3:48850‑M2/1‑83 (MQ=255)                                                                 gCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGc                                                                                                                  <  4:159790/113‑1 (MQ=255)                                                                 gCATCAAATCGGACAAGTGGATTCGACGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGc                                                                                                                  >  3:159790/1‑113 (MQ=255)                                                                  cATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCcgac                                                                              >  5:320965/1‑148 (MQ=255)                                                                       aaTCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGATGTACGCTGCGCCGACGAAtt                                                                         >  5:219022/1‑148 (MQ=255)                                                                         tCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTc                                                                        >  8:72719/1‑147 (MQ=255)                                                                         tCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCaa                                                                      <  8:107602/149‑1 (MQ=255)                                                                           ggACAAGTGGATTCGCGGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAgg                                                                    <  7:127139/149‑1 (MQ=255)                                                                                aGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTc                                                               <  7:114142/149‑1 (MQ=255)                                                                                 gTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCgcggcgaatccacttgtccgatttgatgctcatggcggggtgtcctgaagagttgcgaggtgaaaatcg                                                                                <  8:284959‑M2/131‑70 (MQ=255)                                                                                 gTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCgcggcgaatccacttgtccgatttgatgctcatggcggggtgtcctgaagagttgcgaggtgaaaatcg                                                                                >  7:284959‑M2/1‑62 (MQ=255)                                                                                  tGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCgcggcgaatccacttgtccgatttgatgctcatggcggggtgtcctgaagagttgcgaggtgaaaatcgtgacgcgcatattaccggt                                                             <  6:320201‑M2/149‑89 (MQ=255)                                                                                  tGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCAc                                                             <  8:76897/149‑1 (MQ=255)                                                                                  tGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCAc                                                             <  3:59058/149‑1 (MQ=255)                                                                                      ttCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAAc                                                         <  8:279630/149‑1 (MQ=255)                                                                                                 gcgcAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCTGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCgg                                               <  5:325556/148‑1 (MQ=255)                                                                                                       gAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGgt                                                                   <  6:379969/122‑1 (MQ=255)                                                                                                       gAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGgt                                                                   >  5:379969/1‑122 (MQ=255)                                                                                                                  gATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGaaa                              >  2:301982/1‑148 (MQ=255)                                                                                                                      gcgCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCGGGCCAGCCGGGTGATCTCCTTCGGCGGCTGCAGCTATGGTTACGACGTACGCTGCGCCGACGAATGGAGGGTGTTGGCCAGCATCACCTCGGGCCCCGTCGACGCGAAGAAgtt                         >  4:33384/3‑149 (MQ=255)                                                                                                                      gAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAg                                                                     >  3:341529/1‑105 (MQ=255)                                                                                                                      gAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAg                                                                     <  4:341529/105‑1 (MQ=255)                                                                                                                      gAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAAttt                         <  7:152893/149‑1 (MQ=255)                                                                                                                      gAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAAttt                         <  6:106071/149‑1 (MQ=255)                                                                                                                           gTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATg                    >  5:241139/1‑149 (MQ=255)                                                                                                                            ttCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATGc                   >  6:370066/1‑149 (MQ=255)                                                                                                                                       ccAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCGGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATGc                   <  3:6251/138‑1 (MQ=255)                                                                                                                                       ccAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATGc                   >  4:6251/1‑138 (MQ=255)                                                                                                                                        cAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATGCTGGCAGCTtcgt       <  6:320965/149‑1 (MQ=255)                                                                                                                                         aGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATGCTGGCAGCTtcgtc      <  7:72719/149‑1 (MQ=255)                                                                                                                                              cgcgGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATGCTGGCAGCTTCGTCGata  <  5:370066/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    CCGGGACCGGTAATATGCGCGTCACGATTTTCACCTCGCAACTCTTCAGGACACCCCGCCATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGCATGATCGAGCCGTTCGTCGAGCGCCAGGTGCGCGGCGAGCAGGACAACCGCGTGATCTCCTTCGGCGTCTCCAGCTATGGTTACGACGTACGCTGCGCCGACGAATTCAAGGTGTTCACCAACATCAACTCGGCCACCGTCGACCCGAAAAATTTCGATGCTGGCAGCTTCGTCGATA  >  NC_002947/1257398‑1257686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.