New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1436037	68 (1.130)	4 (0.070) +TCAGGCGACCC	4/244	NT	8.7%	intergenic (‑74/+79)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	4583522 =	24 (0.400)					intergenic (‑95/+76)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

CTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGG  >  NC_002947/4583374‑4583664                                                                                                                                                      |                                                                                                                                               cTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAg                                                                                                                                                <  2:75446/149‑1 (MQ=255)    gTACCACAGCGGGTCGTCGATGAAGGCTGACGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTATCCGCGAAGATGACACCGCGGTGCCGAGGt                                                                                                                                              <  1:218028/148‑1 (MQ=255)     tACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTg                                                                                                                                             >  7:345278/1‑148 (MQ=255)        cacaGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATg                                                                                                                                         >  4:370670/1‑149 (MQ=255)              gggTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCg                                                                                                                                   <  6:159967/149‑1 (MQ=255)                      gATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGc                                                                                                                            <  6:335993/148‑1 (MQ=255)                      gATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGc                                                                                                                            <  5:167106/148‑1 (MQ=255)                      gATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGc                                                                                                                            <  3:370670/148‑1 (MQ=255)                             gCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTc                                                                                                                    <  6:102692/149‑1 (MQ=255)                                 ccGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTcgcg                                                                                                                 <  2:43654/148‑1 (MQ=255)                                     cgatcagcaggttgcctgtgaggggcatgtagcctccttggaaatctaatgcagatgcatgggggggattacgacccctgtgggagcgggcgtgcccgcgaatcaggcgacccGGTGCATGGCACCGGCTTCGCCGGTGTTCgcgggt                                                                                                              >  7:145066‑M2/114‑146 (MQ=255)                                            ccgttcggcatctggcgcatcgaaaaaccccgttaacaaggttcacacggtgccccccCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGc                                                                                                      >  6:199151‑M1/59‑148 (MQ=255)                                            ccgtgcggcatctggcgcatctaaaaaccccgttaacaaggttcatactttgccccccCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCg                                                                                                       >  6:326870‑M1/59‑147 (MQ=255)                                            caggttgcctgtgaggggcatgtagcctccttggaaatctaatgcagatgcatgggggggattacgacccctgtaggagcgggttcacccgcgaatcaggcgacccGGTGCATGGCACCGGCTTCGCCGGTGTTCGCgg                                                                                                                >  4:14109‑M2/107‑139 (MQ=255)                                            caggttgcctgtgaggggcatgtagcctccttggaaatctaatgcagatgcatgggggggattacgacccctgtaggagcgggttcacccgcgaatcaggcgacccGGTGCATGGCACCGGCTTCGCCGGTGTTCGCgg                                                                                                                <  3:14109‑M2/33‑1 (MQ=255)                                              cTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACACGCTcc                                                                                                   >  3:74282/1‑149 (MQ=255)                                               ttccggatctggggcatcgaaaaaacccggtaacaagtgtccctcggggccccccCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCt                                                                                                  >  6:326039‑M1/56‑149 (MQ=255)                                                 cggcatgtggcgcatcgaaaaagcccgttaaaaaggttcagtctgtgccccccCCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCt                                                                                                  >  8:15825‑M1/54‑148 (MQ=255)                                                  gCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACg                                                                                               >  8:48124/1‑149 (MQ=255)                                                     tgtgaggggcatgtagcctccttggaaatctaatgcagatgcatgggggggattacgacccctgtgggagcgggcgtgcccgcgaatcaggcgacccGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTGAACCCGCTCCTACagg                                                                                             <  8:145066‑M2/52‑1 (MQ=255)                                                       gtgCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCTGGTGTTCGCGGATAAACCCGCTCCTACgggggg                                                                                          >  3:267753/1‑149 (MQ=255)                                                          cGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACggggggggg                                                                                       >  3:25712/1‑149 (MQ=255)                                                           gACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCAt                                                                                                                                          >  4:170199/1‑97 (MQ=255)                                                           gACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCAt                                                                                                                                          <  3:170199/97‑1 (MQ=255)                                                                 tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAg                                                                                >  1:348662/1‑149 (MQ=255)                                                                 tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTAGCGGATAAACCAGCTCCTACGGGGGGGGGGGcgac                                                                                 >  3:250781/1‑145 (MQ=255)                                                                     aaTTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATgg                                                                                                                                        <  8:62312/89‑1 (MQ=255)                                                                     aaTTGCATGAACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATgg                                                                                                                                        >  7:62312/1‑89 (MQ=255)                                                                                        cGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGGCTGAACCTTGGTAACGGGCttt                                                         >  6:81619/1‑149 (MQ=255)                                                                                         gAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCCCACGGTGAACGGTTGTAAGGGGCtttt                                                        >  4:102557/1‑149 (MQ=37)                                                                                                 tCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGGTTTTTGGATgcg                                                >  1:52832/1‑149 (MQ=255)                                                                                                         CC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAAACTTTTTAACCGGCGTTTTAGATgcgccaaaaga                                        <  6:284183‑M1/149‑6 (MQ=255)                                                                                                                GAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACCTTCTAAACATTGTTAACGGGCTTTTACAATGCGCAAGATGCCGAACg                                  <  4:261169‑M1/149‑1 (MQ=255)                                                                                                                GAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTACATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGGACAGGCGGCAACATGTTAACGGGCGTTTTGGAGGCCCCAAGAGCCGAACg                                  <  8:14446‑M1/149‑1 (MQ=255)                                                                                                                            ccGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAggg                     >  7:16927/1‑149 (MQ=255)                                                                                                                            ccGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGCACAGGATGAACCTTGTTAACGGGCTTTTTCGATGCGCCAAATGCCGAACGCAAGGTGCCAggg                     >  8:202958/1‑149 (MQ=38)                                                                                                                                             cgGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCAtt    <  8:16927/149‑1 (MQ=255)                                                                                                                                               gTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGCACAGTCTGAACCTTGTTAACTGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTgg  <  7:202958/149‑1 (MQ=255)                                                                                                                                                   cGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCCCCGGCTGAACCGTGTTAACGGGc                                                            >  5:262869/1‑88 (MQ=21)                                                                                                                                                      |                                                                                                                                               CTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGG  >  NC_002947/4583374‑4583664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.