New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2076015 | 46 (0.760) | 3 (0.050) | 3/252 | NT | 6.0% | coding (531/879 nt) | PP_5479 | LysR family transcriptional regulator |
? | NC_002947 | = 2076049 | 51 (0.900) | coding (565/879 nt) | PP_5479 | LysR family transcriptional regulator |
CCTGGACGTCGGCTTTATCGGGCTGTGGCAGGGCGAAGTAGTGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGC > NC_002947/2075904‑2076197 | ccTGGACGTCGGCTTTATCGGGCTGTGGCAGTGCGAAGTAGTGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGcag > 4:190738‑M2/1‑146 (MQ=255) gTCGGCTTTATCGGGCTGTGGCAGGGCGAAGTAGTGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAgt > 3:3662/1‑149 (MQ=255) gTCGGCTTTATCGGGCTGTGGCAGGGCGAAGTAGTGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAgt > 4:12612/1‑149 (MQ=255) tATCGGGCTGTGGCAGGGCGAAGTAGTGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTtggtg < 5:268984/148‑1 (MQ=255) gggCGAAGTAGTGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCa > 3:254415/1‑149 (MQ=255) gCGAAGTAGTGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCAcc < 5:237864/149‑1 (MQ=255) gtagtGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGCTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGCGgc > 2:124848/1‑149 (MQ=255) gtGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAg < 4:220602/136‑1 (MQ=255) gtGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAg > 3:220602/1‑136 (MQ=255) gtGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGgcgc > 3:113514/1‑148 (MQ=255) aGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGcgacga > 4:184653/1‑149 (MQ=255) gggAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGcgacga > 4:234054/1‑148 (MQ=255) gggAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCgacgac < 5:283975/149‑1 (MQ=255) aGTGCAGCATCGGTTCCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGTCTCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGa > 2:251208/1‑149 (MQ=255) aTCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAg > 6:140031/1‑149 (MQ=255) gCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGttt < 3:12612/148‑1 (MQ=255) gCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACACCTGGCGCTGGCTGACCTGGAAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGttt > 7:243143/1‑148 (MQ=255) ccAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCg < 4:254415/149‑1 (MQ=255) ccAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCg > 3:30059/1‑149 (MQ=255) aGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGt > 6:335510/1‑149 (MQ=255) gggAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTg < 1:228584/149‑1 (MQ=255) ggAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCggcac > 1:346372/1‑146 (MQ=255) ggAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTgg < 4:3662/149‑1 (MQ=255) gaaCTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGtt < 5:113688/149‑1 (MQ=255) aCTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTg < 4:30059/148‑1 (MQ=255) tggtggCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGTCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAg > 1:289979/1‑149 (MQ=255) gtggCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAgcg > 2:361808/1‑149 (MQ=255) ggTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGAGGTGGGGTTGCAGCGCAggg > 4:284660/1‑149 (MQ=255) ttGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGTATTTCCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCa < 1:124848/149‑1 (MQ=255) ttGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACGTCCCCGAAGGCACCGGGGCGCGACGACAGACTGAGGAGGCGTTTGAGGCGGTGGGGTTGCAGCGCAGGGTg > 6:380987/1‑147 (MQ=255) cGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTc < 1:251208/149‑1 (MQ=255) ggggCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCa < 7:187073/141‑1 (MQ=255) ggggCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCa > 8:187073/1‑141 (MQ=255) ggCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTc > 2:2441/1‑143 (MQ=255) gCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTc > 5:288525/1‑142 (MQ=255) gCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCg < 3:138026/149‑1 (MQ=255) tCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGcaggcgatgccccaacggcaacaccgccaccagttcttccctggccagcaaccgatgctgcactccctgcactacttcgccctgccacagcccgataaagccgac > 5:201099‑M2/1‑41 (MQ=255) tCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGcaggcgatgccccaacggcaacaccgccaccagttcttccctggccagcaaccgatgctgcactccctgcactacttcgccctgccacagcccgataaagccgac < 6:201099‑M2/146‑106 (MQ=255) tCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGc < 3:184653/149‑1 (MQ=255) tCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGc < 1:2441/149‑1 (MQ=255) gCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGcaggcgatgccccaacggcaacaccgccaccagttcttccctggccagcaaccgatgctgcactccctgcactacttcgccctgccacagcccgataaagccgacgtc < 5:61736‑M2/147‑109 (MQ=255) ccgggCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATg < 6:167771/146‑1 (MQ=255) cTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGt > 3:313808/1‑149 (MQ=255) tGGCGGGCTGGGCAAAGGGGGCGCGGGCGTACCTGGATGGGGATGGGTTGGTGCACTTCCCGGAAGGCACCGGGGCGCGACCACATACTTACGAGGCGTTGCAGCCGGT‑GGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTc < 4:113514/149‑1 (MQ=255) tGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGtt > 4:155145/1‑149 (MQ=255) gggcagggcaCAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCa > 1:348281/1‑119 (MQ=255) gggcagggcaCAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCa < 2:348281/119‑1 (MQ=255) gcagggcaCAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCtg < 1:361808/149‑1 (MQ=255) agggcaCAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCtggt < 5:140031/149‑1 (MQ=255) acaGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGgag > 4:352579/1‑148 (MQ=255) ctggcgctggcTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAAtt < 2:180581/149‑1 (MQ=255) gcgctggcTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCg < 5:335510/148‑1 (MQ=255) gctggctgACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATc > 5:51232/1‑118 (MQ=255) gctggctgACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATc < 6:51232/118‑1 (MQ=255) gctggctgACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTg > 3:287597/1‑148 (MQ=255) aCCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCgggg > 7:183184/1‑148 (MQ=255) aCCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCggg < 2:289979/147‑1 (MQ=255) ccTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCa > 2:14750/1‑149 (MQ=255) gCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGc > 8:14133/1‑149 (MQ=255) | CCTGGACGTCGGCTTTATCGGGCTGTGGCAGGGCGAAGTAGTGCAGGGAGTGCAGCATCGGTTGCTGGCCAGGGAAGAACTGGTGGCGGTGTTGCCGTTGGGGCATCGCCTGGCGGGCAGGGCACAGCTGGCGCTGGCTGACCTGGCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGC > NC_002947/2075904‑2076197 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |