New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2556863 =	41 (0.680)	3 (0.050)	3/254	NT	7.0%	coding (448/1200 nt)	PP_2241	MFS transporter
	?	NC_002947	2556907 =	41 (0.710)					coding (404/1200 nt)	PP_2241	MFS transporter

GCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTCAGCAGCTTGCG  >  NC_002947/2556760‑2557055                                                                                                                                                    |                                                                                                                                                     agccggtatttcccatggctcccggacttgagtggctgactgcggcacgcttcgtcgaccgcgtcggcaagggtattcgggggggcccacgcgatgcgctggtGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGccac                                                                                                                                                     >  7:60260‑M1/104‑149 (MQ=255)     cccAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAgc                                                                                                                                                 <  1:29450/149‑1 (MQ=255)      ccAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCTCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAgcg                                                                                                                                                >  8:292494/1‑149 (MQ=255)      ccAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAgcg                                                                                                                                                >  6:192025/1‑149 (MQ=255)            cacGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATcgc                                                                                                                                          >  2:333009/1‑149 (MQ=255)              cGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGt                                                                                                                                        <  7:112379/149‑1 (MQ=255)                gTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTgg                                                                                                                                      <  1:282500/149‑1 (MQ=255)                  cTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGc                                                                                                                                    >  5:76040/1‑149 (MQ=255)                      aaaTGGCTCGCTGTCAACAACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGTCGTAACATCGGCCACCAGCGCATCGCGTGGGccccc                                                                                                                                >  3:78667/1‑149 (MQ=255)                                   tCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCtt                                                                                                                    <  4:261821/148‑1 (MQ=255)                                   tCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCtt                                                                                                                    <  2:55990/148‑1 (MQ=255)                                           aTCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGcccc                                                                                                                                 >  7:117930/1‑127 (MQ=255)                                           aTCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGcccc                                                                                                                                 <  8:117930/127‑1 (MQ=255)                                           aTCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGAcgcg                                                                                                           >  3:266150/1‑149 (MQ=255)                                           aTCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGAcgcg                                                                                                           >  4:224262/1‑149 (MQ=255)                                           aTCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGAcgc                                                                                                            >  1:320478/1‑148 (MQ=255)                                              aaTACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGt                                                                                                         <  3:311562/148‑1 (MQ=255)                                                       gCCAGCAATGGACCGAGGATAGCGCCTACGGTATAGAGCCCCTGACGCACGCCGAACGCCGCGCCGCGCAGCTCGAACGGCGTAAAATAGGCACCAAGCGCATCGCGTGCGCCCCCCCGAATAACCATGCCGACGCGCTcgacgacgag                                                                                               >  8:271003/1‑145 (MQ=255)                                                        ccAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTc                                                                                                        <  4:307948/139‑1 (MQ=255)                                                        ccAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTc                                                                                                        >  3:307948/1‑139 (MQ=255)                                                         cAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTg                                                                                             <  5:192025/149‑1 (MQ=255)                                                         cAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTg                                                                                             <  1:333009/149‑1 (MQ=255)                                                           gCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGcc                                                                                           <  2:320478/149‑1 (MQ=255)                                                                ggCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGt                                                                                      >  1:331537/1‑149 (MQ=255)                                                                   ccGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAg                                                                                   >  6:62332/1‑149 (MQ=255)                                                                            gcgcCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCaa                                                                           <  5:62332/148‑1 (MQ=255)                                                                                cTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCg                                                                      >  3:30245/1‑149 (MQ=255)                                                                                   cGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCgg                                                                     <  4:78667/147‑1 (MQ=255)                                                                                    ggTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAg                                                                  <  1:148773/149‑1 (MQ=255)                                                                                     gTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGc                                                                 >  7:215998/1‑149 (MQ=255)                                                                                     gTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGc                                                                 >  8:132341/1‑149 (MQ=255)                                                                                      tATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGc                                                                 >  4:368703/1‑148 (MQ=255)                                                                                           aGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGATCCATgg                                                            >  8:317564/1‑148 (MQ=255)                                                                                           aGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATggg                                                           <  7:292494/149‑1 (MQ=255)                                                                                                     gCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGc                                                 >  1:267505/1‑149 (MQ=255)                                                                                                      gtggccgatgttacgccggtcgagctgcgcggcgcggcgttcggccACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCt                                                >  7:60260‑M2/47‑149 (MQ=255)                                                                                                       aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCCCTCAAGTCCGGGCGCCATGGGAAATACCGGCtt                                               >  5:232142/1‑149 (MQ=255)                                                                                                        ggccgatgttacgccggtcgagctgcgcggcgcggcgttcggccACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGc                                                 >  5:4409‑M2/45‑146 (MQ=255)                                                                                                        ggccgatgttacgccggtcgagctgcgcggcgcggcgttcggccACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGc                                                 <  6:4409‑M2/102‑1 (MQ=255)                                                                                                        GGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTtc                                              >  7:317564‑M1/1‑149 (MQ=255)                                                                                                         GCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTtca                                             <  5:290752‑M1/149‑1 (MQ=255)                                                                                                          CCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGa                                                                   <  5:352726‑M1/126‑1 (MQ=255)                                                                                                          CCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGa                                                                   >  6:352726‑M1/1‑126 (MQ=255)                                                                                                            GAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCa                                                                                        >  4:276270‑M1/1‑103 (MQ=255)                                                                                                            GAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCa                                                                                        <  3:276270‑M1/103‑1 (MQ=255)                                                                                                              aCGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAgc                                        <  3:224262/149‑1 (MQ=255)                                                                                                                   gcgccgcgcAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACt                                   <  3:368703/149‑1 (MQ=255)                                                                                                                      ccgcgcAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAg                                <  6:76040/149‑1 (MQ=255)                                                                                                                               tCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGcc                       >  2:38015/1‑149 (MQ=255)                                                                                                                                 gACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGa                     <  6:290752/149‑1 (MQ=255)                                                                                                                                        gTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGt              <  2:82971/149‑1 (MQ=255)                                                                                                                                            cATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTcagc          <  8:215998/149‑1 (MQ=255)                                                                                                                                                    accaGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTCAGCAGCTTGCg  >  3:145474/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTCAGCAGCTTGCG  >  NC_002947/2556760‑2557055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.