New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2903987 = | 60 (1.000) | 3 (0.050) | 3/254 | NT | 5.7% | coding (941/1353 nt) | PP_2556 | chromate transporter |
? | NC_002947 | 2904037 = | 42 (0.730) | coding (891/1353 nt) | PP_2556 | chromate transporter |
ACCAGGCCCGCTGCCACTGCGCCCGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTGCCAGCCAAAGGTCG > NC_002947/2903891‑2904182 | aCCAGGCCCGCTGCCACTGCGCCCGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTg > 3:319795/1‑149 (MQ=255) ggCCCGCTGCCACTGCGCCCGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCt < 8:296607/144‑1 (MQ=255) ggCCCGCTGCCACTGCGCCCGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCt > 7:296607/1‑144 (MQ=255) gCTGCCACTGCGCCCGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGa < 3:72228/149‑1 (MQ=255) ccACTGCGCCCGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGAcag < 5:172625/148‑1 (MQ=255) gcCCGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAgccagcca > 7:55089/1‑148 (MQ=255) ccGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAg > 8:266591/1‑149 (MQ=255) gAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGc < 5:8276/149‑1 (MQ=255) aGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGcc < 7:214453/149‑1 (MQ=255) aCGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACa < 3:92550/149‑1 (MQ=255) tggtggGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGt < 5:233686/136‑1 (MQ=255) tggtggGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGt > 6:233686/1‑136 (MQ=255) tggtggGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGcccc > 3:283273/1‑149 (MQ=255) gtggGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGGGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCtt < 2:346099/149‑1 (MQ=255) ccGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGAc < 3:253373/149‑1 (MQ=255) gAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATa > 5:246063/1‑144 (MQ=255) gAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATa < 6:246063/144‑1 (MQ=255) cAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACagccagcc < 5:177156/108‑1 (MQ=255) cAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACagccagcc > 6:177156/1‑108 (MQ=255) cAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGTCATAggg < 7:185209/141‑1 (MQ=255) cAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAggg > 8:185209/1‑141 (MQ=255) ggTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCa < 3:177596/149‑1 (MQ=255) tAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATa < 8:104618/149‑1 (MQ=255) cACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCa > 6:141782/1‑149 (MQ=255) cACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCa > 5:47983/1‑149 (MQ=255) accgacgaaaccgacgaaGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCAc > 4:210900/1‑149 (MQ=255) cgacgaaaccgacgaaGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCAccg > 2:297506/1‑149 (MQ=255) cgaaaccgacgaaGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCAccgccg < 4:150369/149‑1 (MQ=255) gaaaccgacgaaGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGa < 2:147454/104‑1 (MQ=255) gaaaccgacgaaGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGa > 1:147454/1‑104 (MQ=255) aaccgacgaaGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAg < 7:217111/149‑1 (MQ=255) accgacgaaGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAgg > 1:59491/1‑149 (MQ=255) acgaaGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTcag > 5:367935/1‑149 (MQ=255) aGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCagcagc > 2:241365/1‑149 (MQ=255) caccaccaTGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATa > 5:357550/1‑102 (MQ=255) caccaccaTGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATa < 6:357550/102‑1 (MQ=255) caccaTGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCt > 6:380418/1‑149 (MQ=255) accaTGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCtt < 1:297506/149‑1 (MQ=255) atgatcgatggcctggcgctgggcgagaccacgcccgggccgctgatcatCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCAc > 4:20498‑M2/51‑110 (MQ=255) atgatcgatggcctggcgctgggcgagaccacgcccgggccgctgatcatCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCAc < 3:20498‑M2/60‑1 (MQ=255) ATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGt > 4:319795‑M1/1‑149 (MQ=255) GATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCAGCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGCTAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTg < 8:195561‑M1/148‑1 (MQ=255) tcgatggcctggcgctgggcgagcccacgcccgggccgctgatcatCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTg > 4:86619‑M2/47‑146 (MQ=255) TCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTgaag > 7:266591‑M1/1‑149 (MQ=255) gggCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCa > 8:227654/1‑149 (MQ=255) tcGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAg > 4:115127/1‑149 (MQ=255) tcGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTAAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAg > 3:65852/1‑149 (MQ=255) cccAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAgtgt > 2:197540/1‑149 (MQ=255) cccAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAgtgt > 4:323980/1‑149 (MQ=255) ccAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGtgtg < 3:210900/149‑1 (MQ=255) cAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTgtgc < 2:76798/149‑1 (MQ=255) ccATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTgccagc > 4:156149/1‑148 (MQ=255) aTCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTgccagcca > 6:3405/1‑148 (MQ=255) tgatcatCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTGCCAGCCAAAg < 3:86619‑M2/142‑1 (MQ=255) gatcatCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTGTCAGCCAAAgg > 2:99012‑M2/7‑149 (MQ=255) gatcatCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTGCCAGCCAAAgg < 5:380418‑M2/143‑1 (MQ=255) tcatCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTGTCAGCCAAAGGTc < 1:99012‑M2/145‑1 (MQ=255) atCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTgtgccgt > 8:228211‑M2/3‑133 (MQ=255) atCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTgtgccgt < 7:228211‑M2/131‑1 (MQ=255) atCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTGCCAGCCAAAGGTCg < 5:141782‑M2/146‑1 (MQ=255) | ACCAGGCCCGCTGCCACTGCGCCCGCGAGGAACGCCTGGTGGGCGCCGAACATCGGCTGCAGGTAGCCACCGACGAAACCGACGAAGGCCACCACCATGATCAGCGGCCCGGGCGTGGTCTCGCCCAGCGCCAGGCCATCGATCATCTGCGTCGGTGACAGCCAGCCATAGTGGCCGACAGCCCCTTGATAGACATAGGGCAGCACCGCATAGGCACCGCCGAAGGTCAGCAGCGCCGCCTTGGTGAAGAACCAGCCCATTTGCGTCAGTGTGCCGTGCCAGCCAAAGGTCG > NC_002947/2903891‑2904182 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |