New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3021743	45 (0.750)	3 (0.050)	3/250	NT	6.4%	coding (2281/3519 nt)	PP_2638	cellulose synthase operon protein C
	?	NC_002947	= 3021764	46 (0.810)					coding (2302/3519 nt)	PP_2638	cellulose synthase operon protein C

CTGGTAGCGCAGGATGATCCTCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTT  >  NC_002947/3021620‑3021906                                                                                                                                                  |                                                                                                                                                 cTGGTAGCGCAGGATGATCCTCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTggct                                                                                                                                              >  8:257129‑M2/1‑145 (MQ=255)    gTAGCGCAGGATGATCCTCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGAAGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTggctggc                                                                                                                                           >  2:375778‑M2/1‑142 (MQ=255)              atgatCCTCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTg                                                                                                                                <  6:213249/149‑1 (MQ=255)                 atCCTCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCCATGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTgcg                                                                                                                              <  1:275445/149‑1 (MQ=255)                  tCCTCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTgcg                                                                                                                              >  4:122248/1‑147 (MQ=255)                  tCCTCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTgcg                                                                                                                              >  5:341697/1‑147 (MQ=255)                     tCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGt                                                                                                                          >  2:109467/1‑148 (MQ=255)                       aaCGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGAt                                                                                                                       <  7:300916/149‑1 (MQ=255)                                     cTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTa                                                                                                         >  2:337301/1‑149 (MQ=255)                                      tttACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGAGCAGTCATGTGGAAGCCCTGTAt                                                                                                        >  1:86690/1‑149 (MQ=255)                                          cgcgGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑cc                                                                                                   <  1:337301/149‑1 (MQ=255)                                          cgcgGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑c                                                                                                    <  7:220940/148‑1 (MQ=255)                                            cgGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAg                                                                                                 <  3:122248/149‑1 (MQ=255)                                             ggCAGCGATGGCCGATGCGCAGGTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCCGC‑CGGCGCAGTGATGGGGAGGCCCTGTAACG‑CCAgc                                                                                                >  7:236738/1‑149 (MQ=255)                                                   gATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATa                                                                                          >  7:131464/1‑149 (MQ=255)                                                   gATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATa                                                                                          >  3:98911/1‑149 (MQ=255)                                                            tGCGCAGTGGCTGGACCGCGCCGCCGTAGCGCCACGGGACGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGa                                                                                 <  8:236738/149‑1 (MQ=255)                                                                   ttGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGAt                                                                          >  3:166264/1‑149 (MQ=255)                                                                      cTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATc                                                                                                       >  7:305052/1‑118 (MQ=255)                                                                      cTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATc                                                                                                       <  8:305052/118‑1 (MQ=255)                                                                      cTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGc                                                                        <  3:34187/148‑1 (MQ=255)                                                                        ggACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAg                                                                                                                           <  7:313648/96‑1 (MQ=255)                                                                        ggACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAg                                                                                                                           >  8:313648/1‑96 (MQ=255)                                                                        ggACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCAt                                                                      >  3:226162/1‑148 (MQ=255)                                                                         gACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCAt                                                                      <  6:341697/147‑1 (MQ=255)                                                                         gACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGa                                                                    >  2:327209/1‑149 (MQ=255)                                                                              tgctgcCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACg                                                               >  5:123142/1‑149 (MQ=255)                                                                                   ccGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATAGCCATGTGACGCTGATGCATGCCTACGGCTgg                                                          >  3:6937/1‑149 (MQ=255)                                                                                   ccGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCAAGTGACGCTGATGCATGCCTACGGCTgg                                                          >  2:298204/1‑149 (MQ=255)                                                                                   ccGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATCCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTgg                                                          >  1:304683/1‑149 (MQ=255)                                                                                    cGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGgc                                                         <  1:327209/149‑1 (MQ=255)                                                                                            cACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCGTGTAACGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGcgacga                                                  >  1:120881/1‑149 (MQ=255)                                                                                                        gTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACg                                             <  7:70839/141‑1 (MQ=255)                                                                                                        gTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACg                                             >  8:70839/1‑141 (MQ=255)                                                                                                         tGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCg                                    <  4:98911/149‑1 (MQ=255)                                                                                                            aTTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTa                                 >  4:161820/1‑149 (MQ=255)                                                                                                               gACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGCTCTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGGTGAGGCATGACAACGGCTGGCGCGAGGATGACGGTACGCCCGGTagt                               >  1:274129/1‑147 (MQ=255)                                                                                                                aCCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTc                             <  4:187690/149‑1 (MQ=255)                                                                                                                  cc‑TGGCCAGCCGCGAGCAGGATGGCGACGACTggctggccagggtcaatgcacggtcatcccgtggcgctacggcagcacggtccagcaactgcgcatcggccatcgctgccgcgtaaag                                                          <  2:330540‑M2/120‑89 (MQ=255)                                                                                                                  cc‑TGGCCAGCCGCGAGCAGGATGGCGACGACTggctggccagggtcaatgcacggtcatcccgtggcgctacggcagcacggtccagcaactgcgcatcggccatcgctgccgcgtaaag                                                          >  1:330540‑M2/1‑32 (MQ=255)                                                                                                                   c‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCCCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTCATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCgg                           >  4:207071/1‑148 (MQ=255)                                                                                                                     tGGCCAGCCGCGAGCAGGATGGCGACGACTggctggccagggtcaatgcacggtcatcccgtggcgctacggcagcacggtccagcaactgcgcatcggccatcgctgccgcgtaaaggtccagtgctcgttgaggatcatcctgcgc                            <  8:190278‑M2/148‑119 (MQ=255)                                                                                                                       gCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACt                       <  4:166264/149‑1 (MQ=255)                                                                                                                       gCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACt                       <  3:161820/149‑1 (MQ=255)                                                                                                                         cagcgccgAGCAGCATGGCTACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGAGTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGa                     <  8:131464/143‑1 (MQ=255)                                                                                                                         cAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACt                       >  7:167363/1‑147 (MQ=255)                                                                                                                             cgcgAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTAc                 >  5:332788/1‑149 (MQ=255)                                                                                                                                gAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTAcc                >  6:231107/1‑147 (MQ=255)                                                                                                                                       aTGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGAcc       <  8:19397/149‑1 (MQ=255)                                                                                                                                           cgacgaCTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCttgt   <  6:123142/149‑1 (MQ=255)                                                                                                                                            gacgacTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCttgtt  >  4:367185/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CTGGTAGCGCAGGATGATCCTCAACGAGCACTGGACCTTTACGCGGCAGCGATGGCCGATGCGCAGTTGCTGGACCGTGCTGCCGTAGCGCCACGGGATGACCGTGCATTGACCC‑TGGCCAGCCGCGAGCAGGATGGCGACGACTGGCTGGCCCGCAGC‑CTGCGCAGTGATGTGGATGCCCTGTATCG‑CCAGCGCAATACCCATGTGACGCTGATGCATGACTACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTT  >  NC_002947/3021620‑3021906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.