New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947913 =	55 (0.910)	5 (0.110)	5/210	NT	12.4%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947998 =	27 (0.570)					coding (51/1797 nt)	PP_3483	type II secretion system protein

GGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCTGTGAGCAGTTGATCGTCGTC  >  NC_002947/3947865‑3948138                                                                                                                                      |                                                                                                                                              gggCCTGGCCCAGCAGGGCGCGGGGGTCGGCGCAAATTTTTGCTGGGTGCTTCGCGGGCATGCCCGCTCCCACAGGTACATCAAAGGTCTGTGGGCTGCATCCATCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCttt                                                                                                                                <  1:83912/149‑1 (MQ=38)           cAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCg                                                                                                                      >  2:126433/1‑149 (MQ=255)             ggaggGCGCGGGGGTAGGCGTAAATTTTTGCGGGGTGCTTCGCGGGCATGCCCGCGCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                                    <  1:327512/149‑1 (MQ=255)             gccgggcgcgGGGGTCGGCGCAAATTTTTGCTGGGTTCTGCGCGGCCAGCCCCGCGCCCCCAGGTCCAGCCCCGGTCGGGGGGCTGCATACACCCGGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                                    <  2:207141/143‑1 (MQ=255)                 gTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGAATCCGGGGTTg                                                                                                                >  2:103424/1‑149 (MQ=255)                      gggggTAGGCGGAAATTTTTGATGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATAACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGCAGTCGGTGCAGGCGTAGCAGATTCCGGGGTAGCATc                                                                                                            >  2:78648/1‑148 (MQ=38)                              gCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTGTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTGCGGGGTTGCATCGAATGCTTc                                                                                                   >  5:284419/1‑149 (MQ=255)                               cGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGAATCCGGGGTTGCATCGAATGCTTCt                                                                                                  <  1:103424/149‑1 (MQ=255)                                   aaTTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCa                                                                                              >  6:116365/1‑149 (MQ=255)                                     tttttGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACTGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATg                                                                                            <  1:283038/149‑1 (MQ=255)                                      ttttGCGGGGTTGGTCGCGGCCAGGCCCGCTCCCCCCGGTACATCCCAGGTCGGTGGGCTGCTTACTTCGTGTGGGTGCGGGAATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATg                                                                                            <  4:107195/148‑1 (MQ=255)                                       tttGCTGGGTTCTTGGCGGGCATGCCGGCTCCCACAGGTACATCACTGGTCGGTGGGCTGCTTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATgg                                                                                           <  4:249354/148‑1 (MQ=255)                                           cggggcTCTCCGCGGCCAGGCCCGCTCCCACCGTTACACCCCAGGTCTGGGGGCTGCATCCCTCCTGGGGGAGCGGGAATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc                                                                                      >  2:274331‑M1/7‑149 (MQ=255)                                           cTGGGTTCTTCGCTGGCATGCCCGCTCCCACCGGTACATCACCGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc                                                                                      <  6:284419/149‑1 (MQ=255)                                           cTGGGTGCTTCGCGGGCATGCCCGCCCCCACAGGTACATCACAGGTCTGGGGGCTGCATACCTCCTGGGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTg                                                                                       <  8:99211/148‑1 (MQ=39)                                            tGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACCTCACAGGTCTGTGGGCGGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCGTTGCAGATGCCGGGGTGGCATCGAATGCTTCTGGCATGGCCTGCg                                                                                     >  8:94271/1‑149 (MQ=38)                                                   ttcGCGGGCATGCCCGCTCCCACGGGTACAACACAGGTGGGTGGGCTGCATACAACGAGTGGGAGCCGGGATGGCCGCGAGGAGCTCGGTGCTGGCGTTGCAGAATGCGGGGTTGCATCGAATGCTTGTGGCATGGCCTGCGTGTCCGc                                                                              >  8:173855/1‑149 (MQ=255)                                                         GGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAggg                                                                        >  2:78808‑M1/1‑149 (MQ=255)                                                            ATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcg                                                                     <  2:247035‑M1/149‑1 (MQ=255)                                                              GCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGcgcg                                                                   <  7:12338‑M1/149‑1 (MQ=255)                                                               cccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAg                                                                          >  4:144597‑M2/72‑141 (MQ=255)                                                               cccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAg                                                                          <  3:144597‑M2/70‑1 (MQ=255)                                                                ccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTc                                                                 >  1:227726‑M2/71‑149 (MQ=255)                                                                CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTc                                                                 <  2:171509‑M1/149‑1 (MQ=255)                                                                  gctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg                                                                >  3:308572‑M2/69‑148 (MQ=255)                                                                         CAGGTACATCCGAGGTCTGTGGGCTGCATACATCCTGGGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg                                                        >  2:31126‑M1/1‑149 (MQ=255)                                                                            GTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTc                                                     <  2:44041‑M1/149‑1 (MQ=255)                                                                               cATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGc                                                  <  1:171509/149‑1 (MQ=255)                                                                                    ccggTCGGGGGGCTGCAACCATCCTGGGGCCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAggg                                             <  1:138437/147‑1 (MQ=255)                                                                                    caGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAggg                                             <  5:116365/149‑1 (MQ=255)                                                                                    caGGTCTGGGGGCTGCATCCCTCCTGTGGGCGCGGGCATGCCCGCGAAGACGGCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAggg                                             <  7:94271/149‑1 (MQ=255)                                                                                       gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTg                                          >  2:40018/1‑149 (MQ=255)                                                                                          tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTg                                                                                                 <  2:37662/91‑1 (MQ=255)                                                                                          tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTg                                                                                                 >  1:37662/1‑91 (MQ=255)                                                                                            tgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgc                                     <  1:44041/149‑1 (MQ=255)                                                                                            ggggCTGCATAAATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCggg                                      <  1:126433/147‑1 (MQ=255)                                                                                              ggCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgcgc                                   >  1:184979/1‑149 (MQ=255)                                                                                              acctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgcgc                                   <  2:227726‑M2/109‑1 (MQ=255)                                                                                                cTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGcgcc‑g                                <  2:184979/149‑1 (MQ=255)                                                                                                   cattgaTCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGGGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGTGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTa                             <  1:78648/144‑1 (MQ=255)                                                                                                      aCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTc                          >  7:277260/1‑149 (MQ=255)                                                                                                        aTCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTccc                        >  6:166988/1‑149 (MQ=255)                                                                                                         tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTcccc                       >  8:133510/1‑149 (MQ=255)                                                                                                         tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGAGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgcgc                                   >  3:311057/1‑138 (MQ=255)                                                                                                         tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGAGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgcgc                                   <  4:311057/138‑1 (MQ=255)                                                                                                          cctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCt                      >  8:324359‑M2/29‑149 (MQ=255)                                                                                                          cctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCt                      >  8:50989‑M2/29‑149 (MQ=255)                                                                                                           ctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCCTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCtg                     >  3:121938‑M2/28‑149 (MQ=255)                                                                                                           ctgggggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCCCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCtg                     <  7:173855‑M2/122‑1 (MQ=255)                                                                                                              tgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCTGTGa                  <  1:247035‑M2/125‑1 (MQ=255)                                                                                                               gggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCt                                                                             >  6:236648‑M2/24‑90 (MQ=255)                                                                                                               gggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCt                                                                             <  5:236648‑M2/67‑1 (MQ=255)                                                                                                                 gagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTg                                          >  1:149856‑M2/22‑123 (MQ=255)                                                                                                                  agcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCTGTGAGCAg              <  8:277260‑M2/129‑1 (MQ=255)                                                                                                                        catgccagcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAAAGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCTGTGAGCAGTTGAtc        >  3:194658‑M2/15‑149 (MQ=255)                                                                                                                            cccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCTGTGAGCAGTtgatcgccc    >  7:34986‑M2/11‑146 (MQ=255)                                                                                                                            cccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCTGTGAGCAGTtgatcgccc    >  3:100632‑M2/11‑146 (MQ=255)                                                                                                                               gcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCAGCTATTCCCCTGTGAGCAGTTGAtcgtcgtc  <  1:40018‑M2/142‑1 (MQ=255)                                                                                                                                      |                                                                                                                                              GGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCC‑GCTATTCCCCTGTGAGCAGTTGATCGTCGTC  >  NC_002947/3947865‑3948138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.