Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,370,345 | T→C | 8.5% | A13A (GCT→GCC) | PP_3847 → | LuxR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,370,345 | 0 | T | C | 8.5% | 162.4 / 5.0 | 59 | A13A (GCT→GCC) | PP_3847 | LuxR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base T (28/26); new base C (2/3); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 |
ACGTGTATGTTGGCTCAATCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGCCCGCAGGTGCTCGCT > NC_002947/4370200‑4370489 | aCGTGTATGTTGGCTCAATCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCtt > 4:284127/1‑147 (MQ=255) aCGTGTATGTTGGCTCAATCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCtt < 3:284127/147‑1 (MQ=255) tgtATGTTGGCTCAATCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCCTggtgc > 4:110746/1‑146 (MQ=255) tGTTGGCTCAATCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCCTggtgccaag > 2:207864/1‑142 (MQ=255) gCTCAATCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCCTGGTGCCAAGCCAt < 1:217517/148‑1 (MQ=255) aaccGCCAAACTGAACACCACCCGCCAGGGCTGAAACTAACTATGGACAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCa < 8:57425/146‑1 (MQ=255) aaTCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCCTGGTGCCAAGCCAtgtcc < 6:336022/148‑5 (MQ=255) aaTCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCCTGGTGCCAAGCCAtgtcc < 3:110746/148‑5 (MQ=255) aTCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGTCATCGGCAg < 3:34101/149‑1 (MQ=255) cAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTaa > 5:48027/1‑149 (MQ=255) aaCTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGAAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGCCATGGCTTGGCACCAGGCCATCGGCAGACTAATc > 2:306078/1‑149 (MQ=255) aaCTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGAAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATc > 2:301550/1‑149 (MQ=255) tGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAgg > 4:327710/1‑129 (MQ=255) tGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAgg < 3:327710/129‑1 (MQ=255) aaCAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGc > 8:228352/1‑149 (MQ=255) cAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCAc > 8:298856/1‑149 (MQ=255) gCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACtt < 2:151522/149‑1 (MQ=255) cACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACtt > 5:280288/1‑148 (MQ=255) cACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGCGGTAACCCCCTATGGGAAGAAACGGCAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAAACGAGGCCCTTg > 3:269/1‑149 (MQ=255) tGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCAt > 7:301733/1‑113 (MQ=255) tGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCAt < 8:301733/113‑1 (MQ=255) aaaCTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGTCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTct > 5:354439/1‑149 (MQ=255) aaGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAAttt > 7:253564/1‑142 (MQ=255) aaGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAAttt < 8:253564/142‑1 (MQ=255) aGTATGGAGAGCCGTAAAACGGAAAGTTATTAGTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGATCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTctggctgg < 5:310664/149‑1 (MQ=255) tATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCTGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGGCCGCCCTAATTTCTGGCTGGcc > 8:328212/1‑149 (MQ=255) aTGGAGAGCCGTTAAACGGAAAGTAATTACTTCGTTGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGATGCACTTGACCGCCCTAATTTCTGGCTGGcc < 8:340976/148‑1 (MQ=255) tGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCtt > 2:14242/1‑149 (MQ=255) gagaGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTgg < 8:35024/149‑1 (MQ=255) agagCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGt < 7:298856/149‑1 (MQ=255) agagCCGTAAAACGGAAAGTAATTACTTCGATGGCGTAACCCCGTATGTGTATAAACGGGAGCAGTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGt < 8:240260/149‑1 (MQ=255) aaaCGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACt < 5:236935/149‑1 (MQ=255) gAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGgata < 7:235324/149‑1 (MQ=255) gTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGgatagata > 5:164691/1‑149 (MQ=255) gTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGgatagata > 3:278954/1‑149 (MQ=255) gTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGgatagat > 5:353149/1‑148 (MQ=255) tAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGgatagata > 2:110644/1‑148 (MQ=255) tAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATAc < 1:110644/149‑1 (MQ=255) ttACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGt > 8:47428/1‑131 (MQ=255) ttACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGt < 7:47428/131‑1 (MQ=255) aCTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGCACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTc < 7:110451/148‑1 (MQ=255) aTGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGa < 6:164691/149‑1 (MQ=255) ggTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGACACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGt > 1:283972/1‑149 (MQ=255) gTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGtt > 2:334017/1‑149 (MQ=255) aCCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGTCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTgg < 6:354439/148‑1 (MQ=255) ccccGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGt > 7:275339/1‑149 (MQ=255) gTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTg < 6:48027/149‑1 (MQ=255) gggTACAAACGGGACCATTACACTGCAGGACATGGCTTGGGACCACGCCATCGGCAGCCTAAACGTGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTg < 2:237242/112‑1 (MQ=255) ggTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGa > 2:34437/1‑148 (MQ=255) gggAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTcagcag < 1:334017/149‑1 (MQ=255) tatcATTACACTGCAGGACATGTCTGGGCTCCAGGCCATCGGCAGATTAATCGCGGCTCTTGTCCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATTGATACATTCCGGTGGAGAGTTGGGTCGTGCTGATATTCAGCAGTg < 4:269/146‑1 (MQ=255) gAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTg < 1:14242/149‑1 (MQ=255) ttACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTgg > 1:154114/1‑145 (MQ=255) ttACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTgg < 2:154114/145‑1 (MQ=255) ttACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGc > 4:65320/1‑149 (MQ=255) ttACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGc > 1:291098/1‑149 (MQ=255) acacTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGcc < 6:280288/148‑1 (MQ=255) cacTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGCCCg > 3:104414/1‑149 (MQ=255) aTGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGCCCGCAGGTGCTCGc > 1:331631/1‑149 (MQ=255) aTGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGCCCGCAGGTGCTCGc > 3:62680/1‑149 (MQ=255) tGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGCCCGCAGGTGCTCGCt < 2:291098/149‑1 (MQ=255) | ACGTGTATGTTGGCTCAATCGCCAAACTGAACAGCACCCGCCAGGGCTGAAACTAAGTATGGAGAGCCGTAAAACGGAAAGTAATTACTTCGATGGGGTAACCCCGTATGGGTAGAAACGGGAGCATTACACTGCAGGACATGGCTTGGCACCAGGCCATCGGCAGACTAATCGAGGCACTTGACCGCCCTAATTTCTGGCTGGCCTTGGTGCGTCAACTGGATAGATACATTCCGGTGGACAGTTGGGTCGTGCTGATATTCAGCAGTGGTCGCCCGCAGGTGCTCGCT > NC_002947/4370200‑4370489 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |