Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,410,778 G→C 6.8% H121Q (CAC→CAG)  PP_3894 ← replication protein O

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,410,7780GC 6.8% 235.8 / 6.1 73H121Q (CAC→CAG) PP_3894replication protein O
Reads supporting (aligned to +/- strand):  ref base G (34/34);  new base C (3/2);  total (37/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.18e-01

TTGTCGTTGCCGTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGCCCGAGACACGTTGGCGCGC  >  NC_002947/4410641‑4410922
                                                                                                                                         |                                                                                                                                                
ttGTCGTTGCCGTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCTTTATCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGAtt                                                                                                                                        >  8:347905/1‑148 (MQ=255)
  gTCGTTGCCGTGACCGCCTTCCTCGGCGCCGGTCGAGGAGGATTCGTCGACAACCAATGCGTTAGCATTTGTATTTGTATTTCTTTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGCGTGTTTTCTACACACTGTGTAGaaaac                                                                                                                                      <  2:139492/148‑5 (MQ=255)
      ttGCCGTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAac                                                                                                                                   <  1:21014/147‑1 (MQ=255)
      ttGCCGTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAac                                                                                                                                   >  2:21014/1‑147 (MQ=255)
         ccGTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGt                                                                                                                              >  5:115862/1‑149 (MQ=255)
         ccGTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAAAACGGt                                                                                                                              >  6:9424/1‑149 (MQ=255)
           gTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTg                                                                                                                            >  7:314781/1‑149 (MQ=255)
           gTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTATCTACACAGTGTGTAGATTTCAACACGGTTg                                                                                                                            >  3:41594/1‑149 (MQ=255)
                cGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGAt                                                                                                                                         >  1:144724/1‑131 (MQ=255)
                cGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGAt                                                                                                                                         <  2:144724/131‑1 (MQ=255)
                cGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCtgg                                                                                                                       >  8:283207/1‑147 (MQ=255)
                 gCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGc                                                                                                                      >  2:308496/1‑149 (MQ=255)
                     tCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTc                                                                                                                  >  5:259100/1‑149 (MQ=255)
                      ccTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTc                                                                                                                  >  6:322700/1‑148 (MQ=255)
                      ccTCGGCGCCGGTCGATGCGGATGCGTAGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTc                                                                                                                  <  7:347905/148‑1 (MQ=255)
                       cTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCg                                                                                                                 <  8:314781/148‑1 (MQ=255)
                       cTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGa                                                                                                                <  6:83691/149‑1 (MQ=255)
                        tCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGAt                                                                                                               >  4:21395/1‑149 (MQ=255)
                          ggCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGAtt                                                                                                              <  1:226331/148‑1 (MQ=255)
                              ccGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCa                                                                                                         <  7:324381/149‑1 (MQ=255)
                                 gtagatgcggatgcgTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGGGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTc                                                                                                      <  6:59292/146‑1 (MQ=255)
                                   cGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTg                                                                                                                       >  6:46961/1‑130 (MQ=255)
                                   cGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTg                                                                                                                       <  5:46961/130‑1 (MQ=255)
                                    gatgcggatgcgTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAg                                                                                                    <  6:259100/148‑1 (MQ=255)
                                     atgcggatgcgTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAgg                                                                                                   >  3:346846/1‑148 (MQ=255)
                                          gatgcgTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCgg                                                                                             <  2:303772/149‑1 (MQ=255)
                                             gcgTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGTTTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGtt                                                                                           <  5:322700/148‑2 (MQ=255)
                                                tCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGaa                                                                                       <  4:346846/149‑1 (MQ=255)
                                                 cGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGaaa                                                                                      >  7:159068/1‑149 (MQ=255)
                                                  gACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGaaa                                                                                      <  5:273280/148‑1 (MQ=255)
                                                   aCAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGt                                                                                    <  4:211163/149‑1 (MQ=255)
                                                   aCAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGt                                                                                    >  3:196110/1‑149 (MQ=255)
                                                       ccAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGAtt                                                                                <  5:9424/149‑1 (MQ=255)
                                                        cAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTg                                                                               >  8:144407/1‑149 (MQ=255)
                                                        cAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTg                                                                               >  3:184065/1‑149 (MQ=255)
                                                         aaTGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTAAACAGTGTGTAGATTTCAAAAAGGTTGTCTTGCTGTCGATTCTCCACTAAGGTACAGGTAGGAAAGTGATTgg                                                                              >  5:173347/1‑149 (MQ=255)
                                                                     ttGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTgcc                                                                  >  3:289889/1‑149 (MQ=255)
                                                                     ttGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTgcc                                                                  >  6:217740/1‑149 (MQ=255)
                                                                     ttGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTgcc                                                                  <  6:161659/149‑1 (MQ=255)
                                                                       ggTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACggct                                                                                                                             >  8:310466/1‑86 (MQ=255)
                                                                       ggTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACggct                                                                                                                             <  7:310466/88‑3 (MQ=255)
                                                                                 tttCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATtctc                                                                                                           <  1:205871/96‑1 (MQ=255)
                                                                                 tttCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATtctc                                                                                                           >  2:205871/1‑96 (MQ=255)
                                                                                    cTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACAAGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAg                                                   >  1:16699/1‑149 (MQ=255)
                                                                                     tGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAAAACGGTTGGGTTGCTGTCGATTAAACACTAAGGTACCGGTAGGAAAGTTATTTGGTCGAGAATGACGCCATAGCCGAAAAg                                                   >  1:297815/1‑148 (MQ=255)
                                                                                        cTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCAc                                                <  4:289889/148‑1 (MQ=255)
                                                                                              tgtgtgTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGa                                         >  6:194129/1‑149 (MQ=255)
                                                                                                tgtgtAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGAc                                        <  3:21395/148‑1 (MQ=255)
                                                                                                  tgtAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTgc                                                                   >  8:125949/1‑119 (MQ=255)
                                                                                                  tgtAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTgc                                                                   <  7:125949/119‑1 (MQ=255)
                                                                                                  tgtAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCAcgcg                                             >  8:228562/1‑141 (MQ=255)
                                                                                                  tgtAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCAcgcg                                             <  7:228562/141‑1 (MQ=255)
                                                                                                  tgtAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCC‑CCATCGCGGAAAAGCACGCGCTGACGGa                                     >  5:345397/1‑148 (MQ=255)
                                                                                                    tAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGAt                                    <  7:144407/148‑1 (MQ=255)
                                                                                                       ttttCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAAc                                >  5:10214/1‑149 (MQ=255)
                                                                                                       ttttCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAAc                                <  6:115862/149‑1 (MQ=255)
                                                                                                       ttttCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTGGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAAc                                <  7:283207/149‑1 (MQ=255)
                                                                                                            aaCACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTTGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAAt                            <  6:173347/148‑1 (MQ=255)
                                                                                                            aaCACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGGTTGATTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAAtt                           <  1:308496/149‑1 (MQ=255)
                                                                                                               acaGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGAt                        >  6:219791/1‑149 (MQ=255)
                                                                                                                 aGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCg                      <  5:194129/149‑1 (MQ=255)
                                                                                                                    ggCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGccc                   <  8:159068/149‑1 (MQ=255)
                                                                                                                     gCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGccc                   >  1:268221/1‑148 (MQ=255)
                                                                                                                     gCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGCCCg                  <  4:196110/149‑1 (MQ=255)
                                                                                                                       aGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGCCCgag                <  4:184065/149‑1 (MQ=255)
                                                                                                                           ttgaaatCTACACACTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGAt                        >  6:6968/7‑137 (MQ=255)
                                                                                                                           ttgaaatCTACACACTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGAt                        <  5:6968/131‑1 (MQ=255)
                                                                                                                              aaatCTACACACTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGCCCGAGACACGtt         >  4:174425/4‑149 (MQ=255)
                                                                                                                               aatCTACACACTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTAACGGTAGGAAAGTGATTGGGTCGCGACTGCCGACATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGCCCGAGACACGTTg        >  1:246336/3‑149 (MQ=255)
                                                                                                                                ttCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGCCCGAGACACGTTg        <  6:220639/148‑1 (MQ=255)
                                                                                                                                   tACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGaaaa                                                    <  1:317634/101‑1 (MQ=255)
                                                                                                                                   tACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGaaaa                                                    >  2:317634/1‑101 (MQ=255)
                                                                                                                                     cacaGTGTGTAGATTTCAACACGGTTCGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGCCCGAGACACGTTGgcgcgc  >  2:139995/1‑149 (MQ=255)
                                                                                                                                         |                                                                                                                                                
TTGTCGTTGCCGTGACCGCCTTCCTCGGCGCCGGTCGATGCGGATGCGTCGACAACCAATGCGTTAGCATTGGTATTTGTATTTCTGTCTTTTATGTGTGTAATTTTCAACACAGTGGCAGGGGTGTTTTCTACACAGTGTGTAGATTTCAACACGGTTGGCTTGCTGTCGATTCTCCACTCAGGTACCGGTAGGAAAGTGATTGGGTCGCGACTGCCGCCATCGCGGAAAAGCACGCGCTGACGGATCAACGAATTGATCGCCCGAGACACGTTGGCGCGC  >  NC_002947/4410641‑4410922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑