| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,079,126 | T→A | 13.1% | intergenic (‑371/+26) | mgtE ← / ← PP_t56 | magnesium transporter/tRNA‑Arg |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,079,126 | 0 | T | A | 13.1% | 218.9 / 18.7 | 90 | intergenic (‑371/+26) | mgtE/PP_t56 | magnesium transporter/tRNA‑Arg |
| Reads supporting (aligned to +/- strand): ref base T (38/40); new base A (4/8); total (42/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.84e-01 | |||||||||||
TCAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAA > NC_002947/5078983‑5079270 | tCAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTg < 5:178561/148‑1 (MQ=255) tGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCgg < 2:75581/149‑1 (MQ=255) cgacgaTTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCggg < 2:42831/148‑1 (MQ=255) cgacgaTTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCAATAGAGCggg < 6:128682/148‑1 (MQ=255) acgaTTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCtt < 3:142639/149‑1 (MQ=255) acgaTTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCtt > 4:133825/1‑149 (MQ=255) gaTTGTTGTGGATGGGAAAGCAGATTTGATTTTTGAGGCCGCTCAGCTGCTCCAAACTACTCCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCtttt < 5:317990/149‑1 (MQ=255) aTTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCAATAGAGCGGGCttttt < 2:22354/149‑1 (MQ=255) aTTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCAATAGAGCGGGCttttt < 6:159396/149‑1 (MQ=255) ttgttgTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCAATAGAGCGGGCttttt < 8:122873/148‑1 (MQ=255) ttgtGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGAt < 7:118410/148‑1 (MQ=255) ttgtGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGAt < 7:107960/148‑1 (MQ=255) gtgGATGGGAACGCACATTTGATTTTTGAGGCCGCTCAGAGGCTCCAAACTACACCGCAATCCTTACAGAAGAGCGTAGCTCGACAGGCGCAAGAATTCATTGGCGCACAAAC‑AAACAGCCCGCTCACTAGAGCGGGCTTTTTgtttg < 3:281318/148‑5 (MQ=255) gtgGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATggg > 6:175678/1‑149 (MQ=255) gtgGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCAATAGAGCGGGCTTTTTgtttg < 7:182657/148‑5 (MQ=255) tgGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATgggg < 3:246130/149‑1 (MQ=255) tgGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATggg < 1:224275/148‑1 (MQ=255) ggATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATgggg > 7:233200/1‑148 (MQ=255) gggAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCAAta > 8:221619/1‑123 (MQ=255) gggAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCAAta < 7:221619/124‑2 (MQ=255) ggAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGc < 7:220813/149‑1 (MQ=255) ggAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGc < 3:281321/149‑1 (MQ=255) gAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGc > 2:351648/1‑130 (MQ=255) gAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGc < 1:351648/130‑1 (MQ=255) gAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCg > 1:131443/1‑149 (MQ=255) gAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCg > 1:136449/1‑149 (MQ=255) aaaGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATgg < 8:109096/139‑1 (MQ=255) aaaGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATgg > 7:109096/1‑139 (MQ=255) gCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTg < 6:300911/132‑1 (MQ=255) gCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTg > 5:300911/1‑132 (MQ=255) acaTTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCTGGCTTTTTGATGGGGTATGGCGGACt > 8:142633/1‑147 (MQ=255) aTTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTcagc < 1:179925/149‑1 (MQ=255) aTTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTcag > 2:179925/1‑148 (MQ=255) tttGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTcagca < 2:213280/149‑1 (MQ=255) gATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGa > 6:242601/1‑149 (MQ=255) aTTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGa < 3:52538/148‑1 (MQ=255) tttttGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTAtt < 1:263027/108‑1 (MQ=255) tttttGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTAtt > 2:263027/1‑108 (MQ=255) tttttGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGAtt > 8:2503/1‑149 (MQ=255) cGCTCAGCGGCTCCAAACTGCACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGc > 4:321343/1‑148 (MQ=255) cTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGAc < 1:323211/149‑1 (MQ=255) aGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCg < 7:292870/136‑1 (MQ=255) aGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCg > 8:292870/1‑136 (MQ=255) cTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGt < 5:175678/149‑1 (MQ=255) cTCAAAACTACACCTCAATAATTACAGAAGAGCGTATATCGACAGGCTCAATAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGt < 8:233200/149‑1 (MQ=39) tCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGtt > 7:281026/1‑149 (MQ=255) cAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGAATGGCGGACTCAGCAGGATTCGAACCTGCGAACGCTCGGTTCg > 7:297705/1‑149 (MQ=255) aaaCTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGt > 4:42444/1‑149 (MQ=255) aCTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAg > 7:85540/1‑149 (MQ=255) tACACCGCAATCATTACAGAAGAGCGTAGATCGTCAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGcc > 2:342936/1‑149 (MQ=255) tACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTcagca < 5:110319/116‑1 (MQ=255) tACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTcagca > 6:110319/1‑116 (MQ=255) acCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAg < 3:321343/149‑1 (MQ=255) catacATTACAGAAGAGCGTAGATCGACAGGCTCAAGAAATCATTTGCGCACAAAC‑AAAAAGCCAGGTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTAct < 8:297705/145‑1 (MQ=37) tCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTActct > 4:303395/1‑148 (MQ=255) tCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTa > 3:151084/1‑149 (MQ=255) aTTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATc < 5:254819/149‑1 (MQ=255) aTTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATc < 5:242601/149‑1 (MQ=255) ttACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑GAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATc > 1:14360/1‑148 (MQ=255) agaagaGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt < 8:85540/149‑1 (MQ=255) agaagaGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt > 5:338520/1‑149 (MQ=255) aagaGCGTAGATCGTCAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGa < 1:342936/149‑1 (MQ=255) aagaGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt > 5:381824/1‑147 (MQ=255) gagCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGc < 7:2503/149‑1 (MQ=255) cGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt > 6:246574/1‑149 (MQ=255) cGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt < 8:281026/149‑1 (MQ=255) cGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt < 3:42444/149‑1 (MQ=255) aTCGACAGGCTCAATAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGAtt < 1:241524/92‑1 (MQ=255) aTCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGAtt > 2:241524/1‑92 (MQ=255) cGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCATTTTGATGGGGTAAGGCGGACTCAGCAGGATTAGAACCTGCGACCCCTCGGTTAGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGtacc > 5:278861/1‑146 (MQ=25) gACAGGCTCAAGAATTCATTGGCGCACAAAC‑GAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGt < 2:14360/149‑1 (MQ=255) tcAGGATCAAGAATTCATTGGCTCACAAAC‑TAAAAGCCGGCTCTATTGTGTGGGCTTTTTGTTGGGTTATGGCGGACTCAGCAGTATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTg < 6:278861/148‑1 (MQ=18) aCAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTg < 6:76794/149‑1 (MQ=255) tCAAGAATTCATTGGCGCACAAACAAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATgg > 1:194439/1‑148 (MQ=255) aaGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGAGATTGTaag > 6:371027/1‑147 (MQ=255) aaGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACAGTGACCACGTCAGATATGAGTCCGTGaacgaagt > 7:129570/1‑142 (MQ=25) gAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGttt < 3:303395/149‑1 (MQ=255) gAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGAGAttggat > 2:109648/1‑141 (MQ=255) aTTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGAc > 4:311896/1‑148 (MQ=255) aTTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGAc > 3:243828/1‑148 (MQ=255) aTTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGAc > 3:168440/1‑148 (MQ=255) ccatc‑aaaAAGCCCGCTCAATAGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATg < 7:69152/112‑1 (MQ=255) ccatc‑aaaAAGCCCGCTCAATAGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGCTTCGTAGCCGAGTACTCAATCCAGCTCAGCAATg > 8:69152/5‑116 (MQ=18) caaac‑aaaAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCa > 5:133557/1‑149 (MQ=255) catc‑aaaAAGCCCGCTCAATAGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCGATGAGTCCGTGATGGTAGtttt > 6:144511/4‑134 (MQ=255) aaGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTa < 5:246574/149‑1 (MQ=255) gCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACt > 7:217002/1‑149 (MQ=255) gCCCGCTCAATAGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTATATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGAGCAGGTTTCCACTGGCTTACt > 1:195823/1‑149 (MQ=21) gCCCGCTATATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACt < 7:142633/149‑1 (MQ=255) gCTCTATTGAGCGGGCTTTTTGATGGTGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGaaa < 4:138518/149‑1 (MQ=255) | TCAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAAC‑AAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAA > NC_002947/5078983‑5079270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |