| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 395,847 | A→T | 10.2% | intergenic (+29/+175) | fdhA → / ← PP_0329 | formaldehyde dehydrogenase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 395,847 | 0 | A | T | 10.2% | 237.5 / 14.4 | 88 | intergenic (+29/+175) | fdhA/PP_0329 | formaldehyde dehydrogenase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (39/40); new base T (2/7); total (41/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.47e-01 | |||||||||||
GGTAGGTGTGCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTGGAGCGAAGGGCCACTGC > NC_002947/395704‑395995 | ggTAGGTGTGCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAg < 6:149081/149‑1 (MQ=255) tAGGTGTGCATGTGATCAACCTGTATCAGGCTCAGGAAGGGTATGGCGAGTTTGATGCATGTGTGCCTAAGAAATTCGTTATCGACCCTCACAAAATGTGGTGTGCGGCGTA‑ATCAGCTTCGAGTAAAAAGATCCCCTCGCATCGAggg < 1:327724/149‑1 (MQ=255) ggTGTGCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGATGCGAGGGGc < 8:343267/149‑1 (MQ=255) gtgtGCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGAGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCt > 3:179265/1‑149 (MQ=255) tgtgCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCtt < 1:158821/149‑1 (MQ=255) tgtgCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGATGCGAGGGGCtc < 4:127094/149‑2 (MQ=255) tgtgCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGATGCGAGGGGCtc < 4:132461/149‑2 (MQ=255) gtgCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAAAGCCCCTCGATGCGAgggg < 4:106143/145‑1 (MQ=255) gtgCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAAAGCCCCTCGATGCGAgggg > 3:106143/1‑145 (MQ=255) tgCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCtttt < 6:178961/149‑1 (MQ=255) tgCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAAAGCCCCTCGATGCGAGGGGCtct < 2:199078/148‑3 (MQ=255) cAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGATGCGAGGGGCtcttt < 3:202443/148‑1 (MQ=255) cAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCACACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCttttt < 5:126535/148‑1 (MQ=255) ggTGATCAACCTGGATCATGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTTCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCTAGTAAAAAGAGCCCCTCTCATCGAGGGGCTTTTTGTc < 5:348601/149‑1 (MQ=255) ggTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGATGCGAGGGGCtcttttta < 5:28886/149‑4 (MQ=255) gTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTc > 3:293422/1‑148 (MQ=255) gATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAACGAGCCCCTCGCATCGAGGCGCTGTTTGTCCAt > 6:260751/1‑149 (MQ=255) gATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCAt > 4:329889/1‑149 (MQ=255) aaCCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCt > 3:206643/1‑148 (MQ=255) aCCTGGATGATGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGTAATTCGTTATCGACCCTCACAAAATGTGGGGTGCGTCGTA‑ATCAGCCTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCGTTTTGTCCATTCtta < 6:237019/149‑3 (MQ=255) ccTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGa > 7:233822/1‑148 (MQ=255) aTCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGa > 2:345769/1‑148 (MQ=255) aTCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGa > 6:354004/1‑148 (MQ=255) aTCAGCCGCCGGAAGGGTATGCCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGAAATCGACCCGCACAAAAAGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGAc < 5:102582/149‑1 (MQ=255) tCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACa > 1:151265/1‑149 (MQ=255) ccGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGc > 4:318884/1‑149 (MQ=255) aGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAg < 7:20121/149‑1 (MQ=255) gggTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAgg < 7:280060/149‑1 (MQ=255) gggTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAgg < 5:359318/149‑1 (MQ=255) gTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACAtctc < 5:310924/138‑1 (MQ=255) gTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACAtctc > 6:310924/1‑138 (MQ=255) tATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGc < 4:206643/149‑1 (MQ=255) gCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGt > 6:95174/1‑149 (MQ=255) gCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCACTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGTCCGGAGGTGCTTg > 5:4508/1‑148 (MQ=255) gTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATa < 1:345769/149‑1 (MQ=255) tttGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCAt > 2:186754/1‑147 (MQ=255) tttGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATaa < 5:260751/149‑1 (MQ=255) ttGATGCAGGTTTGCCGAAGAAATTCGTTATCGTCCCGCACAAAATTTGGTGTTCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGTGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCTGAGGTGCTTGtaataa < 6:379412/148‑1 (MQ=255) gATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTATATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGc > 1:293472/1‑149 (MQ=255) gATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGc < 3:318884/148‑1 (MQ=255) aTGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGCGGTGCGGCGTA‑ATCACCGTCGAGTAAAAAGAGCCCCTCGCAACGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGCTGCTTGTCATAAGCCt > 2:11469/1‑149 (MQ=255) tGCAGGTGTGCCGAAGAAATTTGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCtt > 2:155184/1‑149 (MQ=255) gCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCtt > 4:359070/1‑148 (MQ=255) aGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCa < 5:95174/149‑1 (MQ=255) ccGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTg < 3:248914/128‑1 (MQ=255) ccGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTg > 4:248914/1‑128 (MQ=255) cGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCtttt > 8:152005/1‑149 (MQ=255) cGAAGAAATTCGTTATCGACCCGCACAAAATGAGGGGTGCGGCGTA‑ATAAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGAAAAGACATCTCGGCCGCAGGTGCTTCTCATAAGCCTTTAATCGCtttt > 4:270548/1‑149 (MQ=255) agaagaaATTCGTTATCGACCCGCACAAAATGTGGGGTGCTGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATAGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCtttt < 6:53651/148‑1 (MQ=255) gaagaaATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTcc > 6:250056/1‑93 (MQ=255) gaagaaATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTcc < 5:250056/93‑1 (MQ=255) aaaTTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCttt > 4:205454/1‑83 (MQ=255) aaaTTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCttt < 3:205454/83‑1 (MQ=255) aaaTTCGTTATCGACCCGCACAAAATGTGGCGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGt > 1:32096/1‑149 (MQ=255) ttCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGa < 5:354004/149‑1 (MQ=255) gTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAgcg > 2:17583/1‑149 (MQ=255) gTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAgcg > 3:73183/1‑149 (MQ=255) gTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAgcg < 4:267895/149‑1 (MQ=255) cccGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGa < 6:305334/138‑1 (MQ=255) cccGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGATTGTCATAAGCCTTTCATCGCTTTTGAAGTCGa > 5:305334/1‑138 (MQ=255) ccGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGca < 6:352619/149‑1 (MQ=255) ccGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGca > 5:310154/1‑149 (MQ=255) acaAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATa > 8:81453/1‑149 (MQ=255) aaaaTGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATAcc < 2:293472/149‑1 (MQ=255) aaaaTGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATAcc > 6:74900/1‑149 (MQ=255) aaTGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCtc < 7:152005/149‑1 (MQ=255) aaTGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCtc < 3:270548/149‑1 (MQ=255) tgtgGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCtcat < 8:4966/149‑1 (MQ=255) tgGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCtcatc < 8:233822/148‑1 (MQ=255) tgGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCtcatc < 2:151265/148‑1 (MQ=255) gTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCtt > 1:107866/1‑90 (MQ=255) gTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCtt < 2:107866/90‑1 (MQ=255) ggcgTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGaa < 7:81453/149‑1 (MQ=255) ggcgTA‑ATCAGCGGCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGaa < 2:312145/149‑1 (MQ=255) gcgTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAg > 5:19136/1‑149 (MQ=255) cgTA‑ATCAGCGTCGAGTAAAACGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGc < 6:363788/149‑1 (MQ=255) tA‑ATCAGCGGCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCt < 3:280627/149‑1 (MQ=255) a‑aTCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTg > 2:172254/1‑149 (MQ=255) aTCAGCGTCGAGTAAAAAGAGCCCATCGCATCTAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGTAGGTGATTGTCATAAGCATTTCATCTCTTTTGAAGTCGAGAGAAGCCAGCACATACCTCATAAGTTCAGAATCCTgt > 8:322558/1‑148 (MQ=255) tCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGt > 5:14631/1‑149 (MQ=255) tCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGt < 7:322558/149‑1 (MQ=255) aGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGa < 6:19136/149‑1 (MQ=255) gAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGcc > 6:249662/1‑149 (MQ=255) ggacaaaaAGCCCCTCGATGCGAGGGGCTCTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCt > 4:159557/5‑149 (MQ=255) gTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCt > 1:155978/1‑149 (MQ=255) ccccTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTGGAGCGAAgg > 2:135500/1‑149 (MQ=255) cccTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTGGAGCGAAggg < 4:179265/149‑1 (MQ=255) cTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTGGAGCGAAGGGc > 3:349383/1‑148 (MQ=255) aTCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTGGAGCGAAGGGCCACTgc < 6:310154/149‑1 (MQ=255) aTCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCAGCGCTTTTGAAGTCGAGCGCCGCCCGCCCCTACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCGTGGCGCGAAGGGCCACTgc > 4:42821/1‑149 (MQ=255) | GGTAGGTGTGCAGGTGATCAACCTGGATCAGGCGCCGGAAGGGTATGGCGAGTTTGATGCAGGTGTGCCGAAGAAATTCGTTATCGACCCGCACAAAATGTGGGGTGCGGCGTA‑ATCAGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTGGAGCGAAGGGCCACTGC > NC_002947/395704‑395995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |