| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,597,888 | G→A | 8.2% | P463P (CCG→CCA) | PP_4923 → | outer membrane efflux protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,597,888 | 0 | G | A | 8.2% | 241.7 / 9.2 | 87 | P463P (CCG→CCA) | PP_4923 | outer membrane efflux protein |
| Reads supporting (aligned to +/- strand): ref base G (44/34); new base A (5/2); total (50/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.52e-01 | |||||||||||
GCGACTACAACAATAGCCGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAGGCCTTCAA > NC_002947/5597743‑5598036 | gcgACTACAACAATAGCCGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGAc < 5:229279/149‑1 (MQ=255) aCTACAACAATAGCCGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTg < 6:223713/149‑1 (MQ=255) tACAACAATAGCCGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTggc > 3:178084/1‑149 (MQ=255) caacaaTAGCCGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTggcgg > 2:162728/1‑149 (MQ=255) caacaaTAGCCGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTggcgg > 2:86621/1‑149 (MQ=255) caacaaTAGCCGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTggcg < 4:178084/148‑1 (MQ=255) ccGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCgg < 2:229133/149‑1 (MQ=255) gTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCGG‑CCGGACCTGGCGGGAGCAGCGGcc < 8:227771/149‑1 (MQ=255) gTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGcc < 3:351508/149‑1 (MQ=255) aCGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCaa < 3:56773/148‑1 (MQ=255) cTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACt > 3:292456/1‑149 (MQ=255) cATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTc > 1:374218/1‑148 (MQ=255) cATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTc < 5:216092/148‑1 (MQ=255) aaTTATCGACAACCTGAGCCTGAAGCAGGGAGCCGTAACCCTGAGCCCGCTAGACCTTGAGGACGTGAAGCGCTACCTGAAACTTGACTACAACCATGACAATGACTTACTGCGG‑CATGACCTGGCGGAAGCAGCTGACAATAACTTc < 5:171238/147‑1 (MQ=255) aTTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGTAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGa < 6:242048/149‑1 (MQ=255) aTTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGa < 4:63744/149‑1 (MQ=255) ttCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCAGGTCCGGCGgcagg > 3:110755/1‑129 (MQ=255) ttCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCAGGTCCGGCGgcagg < 4:110755/130‑2 (MQ=255) cGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAgcg > 3:367249/1‑147 (MQ=255) gACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAgcgc < 2:256480/147‑1 (MQ=255) aaCCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGcc > 1:95170/1‑149 (MQ=255) aaCCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCCGACCTGGCGGCAGCCGCGGCCAAGAACTTCGAGCGCAGGcc > 5:319934/1‑149 (MQ=255) ccTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCtt < 3:243404/149‑1 (MQ=255) ccTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCtt > 7:296219/1‑149 (MQ=255) cTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCtt > 3:247744/1‑148 (MQ=255) tGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCtt > 7:303097/1‑147 (MQ=255) tGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCtt > 8:210922/1‑147 (MQ=255) aGCCTGAAGCATGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTga < 5:293538/147‑1 (MQ=255) aGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCGCCCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTga < 1:86621/148‑1 (MQ=255) ccTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTgaga > 2:280815/1‑147 (MQ=255) cTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAg > 1:9113/1‑149 (MQ=255) aaGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAgg < 6:66910/147‑1 (MQ=255) gcagCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTggtc > 8:150744/1‑147 (MQ=255) ccTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGc > 6:253407/1‑149 (MQ=255) ccTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGc > 1:23801/1‑149 (MQ=255) tGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCtt > 2:184608/1‑149 (MQ=255) ccGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGCCCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCg > 3:229095/1‑149 (MQ=255) cGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAgg < 5:381637/122‑1 (MQ=255) cGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAgg > 6:381637/1‑122 (MQ=255) cGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCAGc > 5:308755/1‑149 (MQ=255) gCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAg < 4:288640/103‑1 (MQ=255) gCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAg > 3:288640/1‑103 (MQ=255) gCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAgggg < 6:75417/123‑1 (MQ=255) gCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAgggg > 5:75417/1‑123 (MQ=255) gACCTGCAGGACCTGACGAGCTACCTGAAACCTGCCTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCca < 8:296219/149‑1 (MQ=255) gACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCca > 5:339891/1‑149 (MQ=255) aCCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCca > 1:231458/1‑148 (MQ=255) aCCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCAAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCca > 1:336720/1‑148 (MQ=255) cTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCa‑cac > 2:343747/1‑149 (MQ=255) cAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGt < 4:367249/149‑1 (MQ=255) aGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTg < 1:184608/149‑1 (MQ=255) ggACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGc < 1:162728/149‑1 (MQ=255) cTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAgg < 2:56481/149‑1 (MQ=255) cTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAgg > 6:203669/1‑149 (MQ=255) tGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGc > 1:331132/1‑149 (MQ=255) gAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGcc > 3:83492/1‑149 (MQ=255) aaGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGc < 1:343747/147‑1 (MQ=255) aaGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCt > 3:330235/1‑149 (MQ=255) gcgcTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGa < 4:292456/149‑1 (MQ=255) tACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAgg > 3:253332/1‑148 (MQ=255) ccTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGc < 2:23801/147‑1 (MQ=255) ccTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCat < 2:374218/149‑1 (MQ=255) ccTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCat > 3:58472/1‑149 (MQ=255) cTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCat > 2:367074/1‑148 (MQ=255) aCCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCa > 3:292163/1‑149 (MQ=255) ccTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCAc > 1:288487/1‑149 (MQ=255) ccTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCAAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCAc < 2:336720/149‑1 (MQ=255) cTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCAcc > 8:342527/1‑149 (MQ=255) cTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTACCAGCACGGTGCCAGGCCTGAAGGCATGATGCAc < 1:33668/149‑1 (MQ=255) gACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCtg > 8:158664/1‑149 (MQ=255) aCCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGc > 5:251311/1‑149 (MQ=255) aCCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGc > 7:201393/1‑149 (MQ=255) cccGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCGTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCt > 8:39300/1‑149 (MQ=255) ccGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTg > 7:267090/1‑149 (MQ=255) cGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTgg > 2:364655/1‑149 (MQ=255) cGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTgg < 7:210922/149‑1 (MQ=255) aGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGCGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCt < 2:9113/149‑1 (MQ=255) ggACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTg > 6:205532/1‑149 (MQ=255) ggACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTg < 4:292163/149‑1 (MQ=255) gACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTgg < 8:201393/149‑1 (MQ=255) gACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTgg < 6:339891/149‑1 (MQ=255) tgcTGCCG‑CCAGGTCCGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTg > 2:109182/3‑144 (MQ=255) tgcTGCCG‑CCAGGTCCGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTg < 1:109182/142‑1 (MQ=255) cTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGACTGAAGGCATGATGCACCTGTGAGCGCTGGCTTGCTGGCGATAg > 4:15564/1‑149 (MQ=255) cTGCCG‑CCAGGTCCGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAg > 5:347862/1‑149 (MQ=255) cTGCCG‑CCAGGTCCGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAg > 6:152283/1‑149 (MQ=255) tGCCG‑CCAGGTCCGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAgg > 8:303081/1‑149 (MQ=255) ccg‑ccgGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAgg < 4:58472/147‑1 (MQ=255) ccg‑ccgGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAGGcc > 5:344684/1‑149 (MQ=255) ccg‑ccgGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAGGc < 7:158664/148‑1 (MQ=255) cgGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAGGCCTTc > 2:327073/1‑148 (MQ=255) cgGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAGGCCTTCa < 5:203669/149‑1 (MQ=255) ggACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAGGCCTTCaa < 8:303097/149‑1 (MQ=255) | GCGACTACAACAATAGCCGTTACGACTACATTCTCGACAACCTGAGCCTGAAGCAGGCAGCCGGCACCCTGAGCCCGCAAGACCTGCAGGACCTGAAGCGCTACCTGAAACCTGACTACAACCCGGACAAGGACTTCCTGCCG‑CCGGACCTGGCGGCAGCAGCGGCCAAGAACTTCGAGCGCAGGCCTTGAGATAGGGGCTGGACTCTTCGCGGGCTTGCCCGCTCCCA‑CACGGTGCCAGGCCTGAAGGCATGATGCACCTGTGAGAGCTGGCTTGCTGGCGATAGGCCTTCAA > NC_002947/5597743‑5598036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |