| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,004,997 | A→T | 6.4% | intergenic (+35/‑141) | PP_5259 → / → ydcJ | LysR family transcriptional regulator/metalloprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,004,997 | 0 | A | T | 6.4% | 233.0 / 5.0 | 92 | intergenic (+35/‑141) | PP_5259/ydcJ | LysR family transcriptional regulator/metalloprotein |
| Reads supporting (aligned to +/- strand): ref base A (39/46); new base T (4/2); total (44/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.75e-01 | |||||||||||
CCATGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCG > NC_002947/6004851‑6005144 | ccATGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGAcc > 5:99140/1‑149 (MQ=255) cATGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACcg > 8:290743/1‑149 (MQ=255) cATGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCACGGCTAAAGCCGCTCCTACGGGGACcg > 8:201021/1‑149 (MQ=255) aTGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGa > 1:233663/1‑145 (MQ=255) aTGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGa < 2:233663/145‑1 (MQ=255) aTGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACcgc > 5:295349/1‑149 (MQ=255) tGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACcgcg > 8:197216/1‑149 (MQ=255) tGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACcgcg > 6:209890/1‑149 (MQ=255) cAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGATCAGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGt < 1:298709/149‑1 (MQ=255) cgcAGTGCCGGAGCGCATTACCTGGCGGATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGgcgc < 6:54971/149‑1 (MQ=255) gcAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGtgcg > 7:353990/1‑149 (MQ=255) aGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGc < 5:138626/149‑1 (MQ=255) gTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTGCAACGGGGGCCGCGTAGGCGCGGC‑t > 4:20660/1‑149 (MQ=255) gTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGcg > 4:168877/1‑148 (MQ=255) tGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑tt < 4:358924/149‑1 (MQ=255) cGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAg < 4:313230/149‑1 (MQ=255) cGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAg < 1:147916/149‑1 (MQ=255) gAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGcc < 1:222548/149‑1 (MQ=255) gAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGAGCGGC‑TTTAGcc > 6:171339/1‑149 (MQ=255) aGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGGTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGAGCGCGTAGGCGCGGC‑TTTAGCCg < 6:99140/149‑1 (MQ=255) gcgcATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCgg > 4:335128/1‑149 (MQ=255) gcgcATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCgg < 2:91784/149‑1 (MQ=255) gagcATTACTTGGAGTATGCCGAGGATGCGGCAGAGGTGACAAAGGTGCGTGCGCTGGTGGAATTGAT‑TGGCGAGCAGTTGCAGGTTTGACGGACTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCg < 8:317350/146‑1 (MQ=255) ccttACCTTGCGTATGCCGTTCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGgcgc < 7:228205/132‑1 (MQ=255) aTTACCTGGTGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGaaa < 8:326295/149‑1 (MQ=255) aTTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGaaa < 5:348659/149‑1 (MQ=255) ccTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGc > 6:297475/1‑149 (MQ=255) ccGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCg < 7:290743/149‑1 (MQ=255) cGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGa < 3:335128/149‑1 (MQ=255) aGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTG‑AGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATc > 5:119254/1‑148 (MQ=255) gCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCaaaa > 4:72181/1‑148 (MQ=255) gCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCaaaa > 3:284502/1‑148 (MQ=255) agagGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGaa < 5:29253/149‑1 (MQ=255) gagGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGGTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAAt < 2:302727/149‑1 (MQ=255) gagGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTGGCAGGTGTGACGGCCTCTTCACGGCTACAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAAt < 7:201021/149‑1 (MQ=255) agGTGCCAAAGTTGCGGGCGCTGGTGGCAGGGAG‑TGGCGAGCAGTTTCTGGTTTGCCGGCCTGTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGTC‑TTTAGCCGTGAAATGGCCGTCGAGGTCGATCAAAAAAGGAAt < 4:213613/148‑1 (MQ=255) gTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGa > 3:318228/1‑148 (MQ=255) tGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGaca < 3:169041/149‑1 (MQ=255) aaaGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGacacac > 5:159707/1‑148 (MQ=255) tGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAACCCGCTCCTACGGGGACCGCCTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACtt > 4:82303/1‑149 (MQ=255) gggCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACttttt < 5:101832/149‑1 (MQ=255) ggCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAACCCCAACAACGGCGACCGGGAAAGCGCCGG‑ATTATCCGGGAAAGGGCCCGAGAGGTACAAAAAAAAAAGAAAGGAACACGCACattttt > 2:132088/1‑149 (MQ=255) gcgcTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACttttttt < 4:284502/149‑1 (MQ=255) gcgcTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGAGCAAAAAAGGAATGACACACACACtgttttt > 4:223686/1‑149 (MQ=255) cTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACcgc < 5:236592/75‑1 (MQ=255) cTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACcgc > 6:236592/1‑75 (MQ=255) ggtggAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCtt > 3:157969/1‑149 (MQ=255) ggtggAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCtt > 3:163715/1‑149 (MQ=255) tttgAATGGAT‑TGGCGAGCAGTTGGAGGTTTGACGGCGTCTTCTCGGCTAAAGCCGCTGCTACGGTGAGCGCGTAGGCGCTGC‑TTTAGCCGGGAAAGGGCGGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTtg < 1:132088/146‑1 (MQ=255) gtggAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTtg < 4:63289/149‑1 (MQ=255) gtggAATGGAT‑TGGCGAGCAGTTG‑AGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTtgt < 6:119254/149‑1 (MQ=255) tggAATGTAT‑TGGCGTGCGTTTGCAGGTTTGACGGCTTCTTGGCGGATAAAGTTGCTCCTACGGGGACCGCGTTGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAATAGGAATTACACACTCACTTTTTTTCGCTtgt < 7:234309/149‑1 (MQ=255) tggAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGTGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTtgt < 8:353990/149‑1 (MQ=255) ggAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTtgtg < 3:20660/149‑1 (MQ=255) t‑tGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGt < 7:197216/149‑1 (MQ=255) ggcaGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAATGCCGCTCCTCGGGGGTCCGGGTAGGGGCGGC‑TTTAGCGGGGATAGTGCCGTCGAGGTCGATCAAAAAAGTAATGacaca < 2:272565/115‑1 (MQ=255) gCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGaccca > 1:272565/1‑118 (MQ=255) cAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGTGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTccc < 5:297475/149‑1 (MQ=255) cAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTccc < 4:318228/149‑1 (MQ=255) aGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCa < 6:130092/149‑1 (MQ=255) gTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTTGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTGGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAg > 6:1962/1‑149 (MQ=255) ttGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACATTTTTTCGCTTGTGAGCAAAGTGGATTACCAGc > 3:20900/1‑149 (MQ=255) tcAGGTTTTCCGGCCTTTTTTGTGCTTAAGCCTTTTCTACGTGGACCGCGTATGCGTGGT‑TTTATCCGGGAAATGGCCGTCGAGTTCGATTAAAAAATGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCt < 8:235461/147‑1 (MQ=255) ggTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCa < 3:72181/149‑1 (MQ=255) gTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTGGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCAt > 4:31124/1‑149 (MQ=255) aCGGCCTCTTCGCGGCTAATGCCGCTCCTAGGGGGACCGCTTAGGCGCGGC‑TTTAGCGGGGAATGGGCGGTCGAGGTCTATCAAAAAAGTAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCTTGTaa < 6:159707/148‑1 (MQ=255) aCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGTC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTaa < 5:209890/148‑1 (MQ=255) aCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGCGTTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGt > 1:280591/1‑147 (MQ=255) aCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAg > 5:382785/1‑121 (MQ=255) aCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAg < 6:382785/121‑1 (MQ=255) ctttCCCGGCTAAAGCCGCGCCTACGCGGTCCCCGTAGGAGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTcc > 6:131292/3‑148 (MQ=37) cgGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTTAGCGTCCGAAccc > 1:138265/1‑148 (MQ=255) tAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACATTTTTTAGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAAc > 6:363679/1‑147 (MQ=255) aaaGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAAc > 8:7367/1‑146 (MQ=255) aaaGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAAc < 7:7367/146‑1 (MQ=255) aaaGCCGCTCCGACGGGGACCGCGTAGGCGCGTC‑TATAGCCGGGAAAGGGCCGACGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCAAGTAAGCGTCCGAACCCAACCAg > 6:98717/1‑149 (MQ=255) gCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGaa < 3:31124/149‑1 (MQ=255) gCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGaa < 4:157969/149‑1 (MQ=255) gCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGaa < 4:163715/149‑1 (MQ=255) gCCGCGCCTACGCGGTCCCCGTAGGAGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAgg > 3:325514/1‑147 (MQ=38) ccGCTCCTACGTGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAg < 1:369751/149‑1 (MQ=255) ccGCGCCTACGCGGTCCCCGTAGGAGCGGC‑TTTAGCCGCGAAGAGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAg > 6:254406/1‑149 (MQ=37) gcgccTACGCGGTCCCCGTAGGAGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAg > 8:87533/4‑114 (MQ=37) gcgccTACGCGGTCCCCGTAGGAGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAg < 7:87533/111‑1 (MQ=37) cTACGGGTACCGCGTAGGCGCGGC‑TTTAGCCGTGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAGCTAGc < 5:171339/148‑1 (MQ=255) cTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAGCTAGc > 5:64847/1‑148 (MQ=255) tACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAGCTAGCGa > 4:220250/1‑149 (MQ=255) tACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCAAACCAGGAAGCTAGCGa > 4:225063/1‑149 (MQ=255) aCGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCaa > 4:132186/1‑55 (MQ=255) aCGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCaa < 3:132186/55‑1 (MQ=255) ggggACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCAGGTAAGCGTCCGAACCCCACCAGGCAGCTAGCGATGc > 8:206787/1‑149 (MQ=255) ggggACAGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAGCTAGCGATGc < 3:223686/149‑1 (MQ=255) gACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAGTGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCg > 5:199592/1‑149 (MQ=255) gACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCg > 7:241075/1‑149 (MQ=255) | CCATGCAATGCGCAGTGCCGGAGCGCATTACCTGGCGTATGCCGAGCATGCGGCAGAGGTGCCAAAGGTGCGGGCGCTGGTGGAATGGAT‑TGGCGAGCAGTTGCAGGTTTGACGGCCTCTTCGCGGCTAAAGCCGCTCCTACGGGGACCGCGTAGGCGCGGC‑TTTAGCCGGGAAAGGGCCGTCGAGGTCGATCAAAAAAGGAATGACACACTCACTTTTTTTCGCTTGTGAGCAAAGTGCATTCCCAGCTTTCATGTAAGCGTCCGAACCCAACCAGGAAGCTAGCGATGCCCG > NC_002947/6004851‑6005144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |