Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,147,575 | A→T | 10.3% | intergenic (‑225/+41) | PP_5392 ← / ← PP_5393 | WD40/YVTN repeat‑containing protein/metal‑binding chaperone |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,147,575 | 0 | A | T | 10.3% | 158.3 / 7.0 | 58 | intergenic (‑225/+41) | PP_5392/PP_5393 | WD40/YVTN repeat‑containing protein/metal‑binding chaperone |
Reads supporting (aligned to +/- strand): ref base A (30/22); new base T (4/2); total (34/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAAGCATTTTCTTGATCAGCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCGGCAGCACGGTCAACGAT > NC_002947/6147430‑6147723 | gAAGCATTTTCTTGATCAGCGTCAACCTCCACGGCTTGACTCGGTGCGGAGTGAGCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAAc < 2:344031/149‑1 (MQ=255) aGCATTTTCTTGATCAGCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACTTCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACAt < 1:60701/149‑1 (MQ=255) aTTTTCTTGATCAGCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCACGGCCGAATATGAAGAAACCGCGCCATGAAACATgg < 1:55426/149‑1 (MQ=255) ttttCTTGATCAGCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCa > 4:307725/1‑149 (MQ=255) tttcgggATCAGCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCAc > 7:23465/7‑149 (MQ=255) aGCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCAcggc < 1:340206/142‑1 (MQ=255) aGCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCAcggc > 2:340206/1‑142 (MQ=255) gCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGaaa > 7:10731/1‑130 (MQ=255) gCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGaaa < 8:10731/130‑1 (MQ=255) aCGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGCATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCt > 6:117052/1‑147 (MQ=255) aCGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGa < 5:247246/149‑1 (MQ=255) tCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCg > 4:65145/1‑149 (MQ=255) ccACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACCGCGGCTTGACATCTGAGAgg > 6:83663/1‑149 (MQ=255) aCGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGTTTCATGGCGcggt > 5:313129/1‑128 (MQ=255) aCGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGTTTCATGGCGcggt < 6:313129/129‑2 (MQ=255) gACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACgag < 8:209652/147‑1 (MQ=255) aCTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACt > 5:100063/1‑149 (MQ=255) tCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGTGCCATGTTTCATGGCGcggtttc > 5:116167/1‑118 (MQ=255) tCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGTGCCATGTTTCATGGCGcggtttc < 6:116167/122‑5 (MQ=255) ggTGCGTAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAg < 8:23465/148‑1 (MQ=255) aTCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑TGCCGAATATGAAGACACCGCGCCATGAAACATGGCACGGCGGCTTGCCATATGAGCGGCTACGAGACTTAGCGAATGACttgg > 6:303479/1‑147 (MQ=255) gAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTttggtt < 3:112761/149‑1 (MQ=255) aGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTttggttgg < 4:259812/149‑1 (MQ=255) aGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTttggttgg > 4:302399/1‑149 (MQ=255) cGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTaa < 3:65145/149‑1 (MQ=255) cGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTaa > 5:50934/1‑149 (MQ=255) tCCACTTTTTGGGGAGTATCGCTGCCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCAACAGAGCGGCAACGAGACTTATCGACTGACTTTGGTTGGCTAAc > 7:249773/1‑148 (MQ=255) cTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAgc > 8:169345/1‑149 (MQ=255) tGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCt < 3:307725/148‑1 (MQ=255) ggggAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTg < 3:132451/148‑1 (MQ=255) ggggAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTg > 1:322951/1‑148 (MQ=255) aGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGAc > 8:247662/1‑147 (MQ=255) gCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCAc < 3:302399/149‑1 (MQ=255) gCTATCTCGACCCGCATTCAGTCGAGATCT‑TGCCTAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGAc < 8:135816/149‑1 (MQ=255) tATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGAcgc > 1:201615/1‑149 (MQ=255) tcGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTc > 2:96696/1‑149 (MQ=255) ccGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACttt > 5:2423/1‑102 (MQ=255) ccGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACttt < 6:2423/102‑1 (MQ=255) tcagtcGACATCA‑TGCCGAATATGAAGATACCGAGCGATGATACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATg < 8:249773/148‑1 (MQ=255) agtcGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGtt < 2:210811/148‑1 (MQ=255) agtcGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTg > 8:229986/1‑149 (MQ=255) gtcGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGc > 4:257713/1‑149 (MQ=255) tcGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCCGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCt > 8:196733/1‑149 (MQ=255) gACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCtt < 7:338221/148‑1 (MQ=255) aCATCA‑GGCCGAATATGAAGAAACCGCGCCTTGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTg > 1:34291/1‑149 (MQ=255) aTCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGa < 7:229986/149‑1 (MQ=255) aTCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGa < 7:247662/149‑1 (MQ=255) cA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGaca > 8:222548/1‑149 (MQ=255) gCCGATTATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGAcactc < 4:317561/149‑1 (MQ=255) gCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGAcactc > 8:61851/1‑149 (MQ=255) gaagaaACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCg > 1:19081/1‑149 (MQ=255) aagaaACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGAcactcac > 2:285219/1‑141 (MQ=255) aagaaACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGAcactcac < 1:285219/141‑1 (MQ=255) aagaaACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCgg > 4:272773/1‑149 (MQ=255) gaaACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCgg > 2:120614/1‑147 (MQ=255) aaaCCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCGgcag > 2:103852/1‑149 (MQ=255) gccGTGCCATGTTTCATGGCGCGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCGgcagca > 7:342987/2‑149 (MQ=255) ccGTGCCATGTTTCATGGCGCGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCGgc > 5:309095/1‑144 (MQ=255) aTGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGCCGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCGGCAGCACGGTCAAc > 5:342482/1‑149 (MQ=255) gAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCACTGCACCGACGCGTTCCGCCTCGATGTTGCTATGGACACTACCTCAACCGGCAGCACGGTCAACGa > 8:185980/1‑149 (MQ=255) aaaCATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCGGCAGCACGGTCAACGAt < 2:201615/149‑1 (MQ=255) | GAAGCATTTTCTTGATCAGCGTCAACGTCCACGGCTTGACTCGGTGCGGAGTGATCGAAGGCCGTCCACTTTTTGGGGAGTATCGCTGGCTATCTCGACCCGGAGTCAGTCGACATCA‑GGCCGAATATGAAGAAACCGCGCCATGAAACATGGCACGGCGGCTTGCCATCTGAGCGGCAACGAGACTTAGCGACTGACTTTGGTTGGGTAACCAAGCGCCTGGACCAGTGCACCGACGCGTTCCGCCTCGATGTTGCTTTGGACACTCACTGTACCGGCAGCACGGTCAACGAT > NC_002947/6147430‑6147723 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |