| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 556,986 | A→C | 6.3% | K12T (AAG→ACG) | rpsN → | 30S ribosomal protein S14 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 556,986 | 0 | A | C | 6.3% | 251.6 / 6.7 | 80 | K12T (AAG→ACG) | rpsN | 30S ribosomal protein S14 |
| Reads supporting (aligned to +/- strand): ref base A (40/35); new base C (2/3); total (42/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.17e-01 | |||||||||||
TGCTCTGCGCGGTTTGGACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAGCGCCTCGCGCCTG > NC_002947/556839‑557131 | tGCTCTGCGCGGTTTGGACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAg > 5:33755/1‑149 (MQ=255) gCTCTGCGCGGTTTGGACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGc > 5:260392/1‑149 (MQ=255) ctctGCGCGGTTTGGACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGc < 3:94126/148‑1 (MQ=255) ctctGCGCGGTGTGGACATCACCCTGACCACCACTGCTCCTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGc < 8:41482/148‑1 (MQ=255) tGCGCGGTTTGGACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGt > 3:57852/1‑147 (MQ=255) gTTTGGACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCAc < 3:340362/149‑1 (MQ=255) tttGGACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑TGAGCTGACGCTTCAGCTcgcg < 5:217675/149‑1 (MQ=255) ggACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGACGCTTCAGCTcgcg > 1:272214/1‑146 (MQ=255) ggACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGACGCTTCAGCTcgcg < 2:272214/146‑1 (MQ=255) aTCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCa > 6:23735/1‑148 (MQ=255) cACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTc < 4:356173/132‑1 (MQ=255) cACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTc > 3:356173/1‑132 (MQ=255) cACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAg > 7:345548/1‑149 (MQ=255) ccTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTc > 5:30614/1‑149 (MQ=255) tGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGc > 4:127863/1‑149 (MQ=255) accaccACTGCTCGTTCGCCCGACGCAGGCGGCGCGCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCCGAAGCGTCAGCTCACGGTAGCAAAGTTCGCt < 8:325161/148‑1 (MQ=255) ccaccaCTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTaa < 4:187063/149‑1 (MQ=255) caccacTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCt > 5:121143/1‑146 (MQ=255) caccacTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTaag < 6:30614/149‑1 (MQ=255) tGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGt > 8:319713/1‑149 (MQ=255) cTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTgc > 2:253781/1‑149 (MQ=255) cTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTg < 8:345548/148‑1 (MQ=255) cTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTg < 3:130050/148‑1 (MQ=255) gTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTgct < 3:339900/147‑1 (MQ=255) ttCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTgctgag < 6:33755/149‑1 (MQ=255) ggACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATGAGGGAGAGAAGAGCATGAGAAAACCG‑CCAGCTGAAGCGACACCTCACGTTAGAAAAATTAGCTAAGAAGCGAgatgag > 1:116559/1‑149 (MQ=255) cgacgaAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGaaa < 7:288627/149‑1 (MQ=255) gacgaAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAg > 6:251009/1‑149 (MQ=255) cgaAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGc > 1:306120/1‑148 (MQ=255) gcgcTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGt > 6:6145/1‑149 (MQ=255) tgctgcGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAAc < 3:127863/147‑1 (MQ=255) ctgcTTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTg < 6:260392/148‑1 (MQ=255) ctgcGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCt < 4:349578/147‑1 (MQ=255) cGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAAc < 6:246535/148‑1 (MQ=255) cGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAAc < 3:109491/148‑1 (MQ=255) gTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGc > 7:26986/1‑149 (MQ=255) tGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCATCCTGAACGcc > 8:294331/1‑149 (MQ=255) tttCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAACAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCctct > 4:52464/1‑149 (MQ=255) tCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCtctc > 5:185833/1‑148 (MQ=255) aaGTTCCCGTTCCGCAACTGATTGGAGTAGGAACATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCa < 8:269452/148‑1 (MQ=255) aGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACTGTAGCAAAGTTCGCTAAGAAGCGAGCAGAGCAGAAAGCGACAATCGTCAACCTGAACGCCACTCAag > 1:43097/1‑148 (MQ=255) gTTCCCTTTCAGCAACTGATTTGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCagaa < 2:251030/149‑1 (MQ=255) ttCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCag > 3:192887/1‑146 (MQ=255) cGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCg > 5:207899/1‑149 (MQ=255) gTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGt < 1:90407/149‑1 (MQ=255) ccGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGttt < 5:6145/148‑1 (MQ=255) gCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTgctgagct > 1:99041/1‑101 (MQ=255) gCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTgctgagct < 2:99041/101‑1 (MQ=255) gCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGc > 1:152697/1‑149 (MQ=255) gCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGc > 6:110982/1‑149 (MQ=255) gCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGc > 4:141071/1‑149 (MQ=255) gCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTAACGGTAGCAAAGTTCGCTAAGAAGCGTGCTTAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGc > 4:244797/1‑149 (MQ=255) cAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGAGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCagaaga > 3:213647/1‑139 (MQ=255) aCTGATTGGAGTAGGAAAATC‑GCCA‑AGTAGAGAATGA‑AAAACCG‑CGAGCTGAATCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCGGAACGGCTCTCCAGATGAGCGTTTCGCTGc < 2:43097/149‑1 (MQ=255) cTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCa < 4:97996/131‑1 (MQ=255) cTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCa > 3:97996/1‑131 (MQ=255) cTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGcc < 2:306120/149‑1 (MQ=255) gATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGt > 6:185832/1‑149 (MQ=255) gAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAAc > 1:342633/1‑109 (MQ=255) gAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAAc < 2:342633/109‑1 (MQ=255) gAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCg > 3:260218/1‑149 (MQ=255) gAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCg < 6:121143/149‑1 (MQ=255) gTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGct > 6:211277/1‑149 (MQ=255) ggAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGctct < 3:52464/148‑1 (MQ=255) ggAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTg > 2:128570/1‑149 (MQ=255) gCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAagc < 5:23735/148‑1 (MQ=255) ccA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAagcag < 2:152697/149‑1 (MQ=255) ccA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAagcag > 8:182983/1‑149 (MQ=255) cA‑AGAAGTGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAagcagc > 5:238528/1‑149 (MQ=255) aa‑agatgAGCAAGA‑AAAACCG‑CGAGCTCAAGCGTCAGCTCACGGTAGAAAAGTTCTCTAACAAGCGTGCTGAGCTCAAAGCGACCATCGTCAACCTGAAAGACTATCCACAACAGCGTATCGCTGCCGTTAACGCTCAGAAGAaccagc > 4:348089/2‑149 (MQ=255) aTGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGc > 4:255863/1‑149 (MQ=255) aaaaCCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAgc > 5:240576/1‑149 (MQ=255) aaaaCCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAgc < 8:26986/149‑1 (MQ=255) aaaCCGCCGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAgc < 4:57852/149‑1 (MQ=255) taCCG‑TGAGCTGACGCTTCAGCTCGCGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAgcgc > 1:267554/2‑149 (MQ=255) taCCG‑CGAGCTGAAGCGTCAGCTCCCGGTAGCAAAGTTCGCTAAGAAGCGTGCGGAGCTGAAAGCGACCATCGTCAACCTGACAGCCTCTCCAGAagag > 7:270158/2‑99 (MQ=255) taCCG‑CGAGCCGAAGCGTCAGCGCACGGCAGCAAAGTTCGCTAAGACGCGTGCTGAGCTGAACGCGACCATCGTCAACCTGAACGCCTCTCCAGAagag < 8:270158/98‑1 (MQ=255) cgAGCTGAAGCGTCAGCTAACGGTAGCAAAGTTCGCTATGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCGTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAGCGCCTcgc < 2:116559/149‑1 (MQ=255) cTGACGCTTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAGCGCCTCGCGCCt < 8:191404/149‑1 (MQ=255) cTGAAGCGTCAGCTAACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAGCGCCTCGCGCCt < 3:348089/149‑1 (MQ=255) aaGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAGCGCCTCGCGCCTg < 1:128570/147‑1 (MQ=255) | TGCTCTGCGCGGTTTGGACATCACCCTGACCACCACTGCTCGTTCGGACGACGAAGGCCGCGCTCTGCTGCGTGCTTTCAAGTTCCCGTTCCGCAACTGATTGGAGTAGGAAAATG‑GCCA‑AGAAGAGCATGA‑AAAACCG‑CGAGCTGAAGCGTCAGCTCACGGTAGCAAAGTTCGCTAAGAAGCGTGCTGAGCTGAAAGCGACCATCGTCAACCTGAACGCCTCTCCAGAAGAGCGTTTCGCTGCCGTTGTCGCTCTGCAGAAGCAGCCACGCGACGCTAGCGCCTCGCGCCTG > NC_002947/556839‑557131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |