Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 99,668 | T→A | 7.4% | intergenic (+17/+90) | PP_0093 → / ← PP_0094 | zinc protease/5'‑nucleotidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 99,668 | 0 | T | A | 7.4% | 157.3 / 2.2 | 54 | intergenic (+17/+90) | PP_0093/PP_0094 | zinc protease/5'‑nucleotidase |
Reads supporting (aligned to +/- strand): ref base T (27/23); new base A (2/2); total (29/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 |
CGGCGCTGTTTCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGCGAAGTGGAAAGCGGG > NC_002947/99530‑99814 | cggcgCTGTTTCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCAGGCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCAAAGCGGcccca < 1:274815/149‑3 (MQ=255) gcgcTGGTTCGTGAGGGGGGTGGGGATTGGGTTCGGGTTTACGCGCGGGGCGAGCATTTGGGGCGGTTGCCGAGTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATcgc < 7:341129/149‑1 (MQ=39) gcTGTTTCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGa < 1:2674/149‑1 (MQ=255) gcTGTTTCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGa > 2:118865/1‑149 (MQ=255) cTGTTTCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCAAAGCGGcccc < 1:168570/142‑2 (MQ=255) cTGTTTCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCAAAGCGGcccc > 2:168570/1‑141 (MQ=255) tGTTTCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGaca > 2:7074/1‑149 (MQ=255) tCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGACCATCGCGACACAAg > 8:44616/1‑149 (MQ=255) gTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGc > 7:48591/1‑149 (MQ=255) tgggtgggGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCTGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCcac < 5:174163/149‑1 (MQ=255) ggggATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTTTATCGGGCCCCGTTTCGGGCCAAAGCGACACAACGGCCCCCCaa > 1:312300/1‑148 (MQ=255) gATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTAAGATTT‑‑TGAGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGccc > 7:340031/1‑149 (MQ=255) gggTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGc < 8:48591/148‑1 (MQ=255) gTTCGGGTTTACGCGCTGGTCGATCATTTGGGGAGGTTGCCGTTTGAAGAAAGGATAGCGGCGTTGCA‑GCGTCTGATGTTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGAGACAAGGGGCCGTCAAAGGCCCTGCGTa < 8:340031/149‑1 (MQ=37) cGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCATAAAGGCCCTGCGTACg < 7:44616/148‑1 (MQ=255) ttttACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCg > 8:309478/1‑148 (MQ=255) ttACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGc > 6:351239/1‑144 (MQ=255) ttACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGc < 5:351239/144‑1 (MQ=255) aCGCGCGGGTCGAGCAGTTGGGGCGGTTGCCGATCGACGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCg < 8:63609/148‑1 (MQ=255) cgcgcgGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAg < 3:170502/149‑1 (MQ=255) cgGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTATGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTgg < 1:118865/149‑1 (MQ=255) gAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑AGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGc < 5:76229/149‑1 (MQ=255) tttGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGtt < 7:309478/149‑1 (MQ=255) gCGGTGGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGGTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAag < 3:207295/149‑1 (MQ=255) ggTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAagca < 1:200680/149‑1 (MQ=255) ccGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCct > 2:138577/1‑149 (MQ=255) gaaagCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGc > 8:137940/1‑149 (MQ=255) gaaagCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGc < 7:137940/149‑1 (MQ=255) aagCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCt > 2:175391/1‑149 (MQ=255) gCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAg < 1:138577/148‑1 (MQ=255) a‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCt > 2:48053/1‑149 (MQ=255) gCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCt > 8:123346/1‑148 (MQ=255) cGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGa < 7:123346/149‑1 (MQ=255) gTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGAt < 1:7074/149‑1 (MQ=255) tGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGc > 5:72982/1‑148 (MQ=255) gATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCa > 2:324167/1‑148 (MQ=255) gATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCa > 8:38390/1‑148 (MQ=255) ttAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCgg < 2:312300/149‑1 (MQ=255) gCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTa > 5:89423/1‑149 (MQ=255) cTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCtt > 7:260748/1‑121 (MQ=255) cTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCtt < 8:260748/121‑1 (MQ=255) tttGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCg > 1:53026/1‑149 (MQ=255) tttGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCg > 7:320923/1‑149 (MQ=255) tttGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCg > 2:54261/1‑149 (MQ=255) tttGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCg > 5:246253/1‑149 (MQ=255) tGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGt < 7:38390/148‑1 (MQ=255) gaTTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGCTCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGc > 7:180070/1‑148 (MQ=255) aTTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGAGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGCg > 3:284793/1‑148 (MQ=255) tGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGCGAAGt < 8:320923/148‑1 (MQ=255) atgggCCGCAAAGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGCGAAGTg > 8:130742/3‑149 (MQ=255) gCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGt > 4:107789/1‑63 (MQ=255) gCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGt < 3:107789/63‑1 (MQ=255) gCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGCGAAGTGGa > 6:188824/1‑147 (MQ=255) cTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGCGAAGTGGAAAGCgg > 5:282994/1‑149 (MQ=255) tttGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCaaa < 8:120506/76‑1 (MQ=255) tttGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCaaa > 7:120506/1‑76 (MQ=255) tGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGCGAAGTGGAAAGCggg < 6:72982/147‑1 (MQ=255) | CGGCGCTGTTTCGTGAGGTGGGTGGGGATTGGGTTCGGTTTTACGCGCGGGTCGAGCATTTGGGGCGGTTGCCGATTGAAGAAAGGAAAGCGGCGTTGCA‑GCGTCTGATGGTTAGCCTTTGAGATTT‑‑TGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCCCCACAAAGGCCCTGCGTACGCCGATCGAGGTGGGAGGGCCGGTTGCAAAGCAGCCCTGCTGGCGCTCAAGCCTTGATAAAAGCCTGATGCAAATCGGCTACCGTGGCGAAGTGGAAAGCGGG > NC_002947/99530‑99814 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |