Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 936,228 T→C 6.6% T3132A (ACC→GCC) ‡ PP_0806 ← surface adhesion protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947936,2280TC 6.6% 212.4 / 4.6 76T3132A (ACC→GCC) ‡PP_0806surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base T (37/33);  new base C (2/3);  total (39/37)
Fisher's exact test for biased strand distribution p-value = 6.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.51e-01

CAGGCTGCCATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGC  >  NC_002947/936082‑936374
                                                                                                                                                  |                                                                                                                                                   
cAGGCTGCCATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCACCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGt                                                                                                                                                     >  8:239031/1‑147 (MQ=255)
 aGGCTGCCATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGCCATACAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAg                                                                                                                                                  >  2:270949/1‑149 (MQ=255)
   gCTGCCATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGc                                                                                                                                                >  4:169162/1‑149 (MQ=255)
   gCTGCCATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGc                                                                                                                                                >  2:139773/1‑149 (MQ=255)
        cATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑Cg                                                                                                                                          >  3:147336/1‑149 (MQ=255)
        cATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTCGGCCTGACCCCGGCCCAGGCCAA‑Cg                                                                                                                                          <  1:4908/149‑1 (MQ=255)
          tCGGCACTCAGTTGCAGTTCGCTGGCGTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGt                                                                                                                                        <  1:199216/149‑1 (MQ=255)
             gCACTCAGTTGCAGTTCGTTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTg                                                                                                                                       >  2:336381/1‑147 (MQ=255)
             gCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTg                                                                                                                                       >  1:310369/1‑147 (MQ=255)
             gCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTg                                                                                                                                       >  5:152795/1‑147 (MQ=255)
             gCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGATAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGACCCCGGCCCAGGCCAA‑CGGCGag                                                                                                                                     <  6:170334/149‑2 (MQ=255)
              cACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAg                                                                                                                                    >  6:272762/1‑149 (MQ=255)
               aCTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGc                                                                                                                                   >  4:301035/1‑149 (MQ=255)
                   aGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTg                                                                                                                                 <  5:150734/147‑1 (MQ=255)
                     ttGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCAt                                                                                                                             >  6:190048/1‑149 (MQ=255)
                      tGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATc                                                                                                                            >  6:253016/1‑149 (MQ=255)
                         aGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCg                                                                                                                          >  1:232720/1‑148 (MQ=255)
                          gTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGa                                                                                                                        >  8:66577/1‑149 (MQ=255)
                             cGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCg                                                                                                                     >  1:325443/1‑149 (MQ=255)
                                 ggCTTCATTGGTCGGTGAGATATCGGGGGCGGTGATCTGGTTAGGCAGCTAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGTGTCTCGCCGTTGGCCTGGGCCGTGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCt                                                                                                                 <  8:205829/149‑1 (MQ=255)
                                   ctgcATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTgg                                                                                                               <  8:25698/146‑1 (MQ=255)
                                   cTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCACCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTgg                                                                                                               <  7:239031/149‑1 (MQ=255)
                                    ttCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTggg                                                                                                              >  3:200149/1‑149 (MQ=255)
                                    ttCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTggg                                                                                                              >  7:278787/1‑149 (MQ=255)
                                         tGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCt                                                                                                          <  4:147336/148‑1 (MQ=255)
                                          gggCGGGGTTATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTg                                                                                                         <  7:347590/148‑1 (MQ=255)
                                             cgggtgcatatCGGGGGCGGTGATCTGGGTAGGCAGCTAACTGTTGCCAGCGCCGTCAACCTCCACGACATCCAGGGGCTCGCCGTTGGCGTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCa                                                                                                     <  5:33945/142‑1 (MQ=255)
                                               gggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAgg                                                                                                   <  1:139773/149‑1 (MQ=255)
                                                ggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCAGCGCCCAggc                                                                                                  <  7:116024/149‑2 (MQ=255)
                                                ggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCAGCGCCCAggc                                                                                                  <  5:272762/149‑2 (MQ=255)
                                                ggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTCGGCCTGACCCCGGCCCAGGCCAA‑Cgg                                                                                                                                         >  7:129000/1‑110 (MQ=38)
                                                ggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTCGGCCTGACCCCGGCCCAGGCCAA‑Cgg                                                                                                                                         <  8:129000/110‑1 (MQ=38)
                                                ggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAACGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAgg                                                                                                   <  3:20400/148‑1 (MQ=255)
                                                ggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAACGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAgg                                                                                                   >  4:20400/1‑148 (MQ=255)
                                                 gTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGAc                                                                                                 <  5:253016/149‑1 (MQ=255)
                                                  tGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACa                                                                                                >  2:47343/1‑149 (MQ=255)
                                                  tGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACa                                                                                                >  2:184909/1‑149 (MQ=255)
                                                    atatCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACAtt                                                                                              >  8:62950/1‑149 (MQ=255)
                                                       tCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGcc                                                                                           <  2:275436/149‑1 (MQ=255)
                                                           gggCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTgc                                                                                       <  1:47343/149‑1 (MQ=255)
                                                            ggCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGACCTGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTgc                                                                                       <  1:280251/149‑1 (MQ=255)
                                                            ggCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTgcg                                                                                      <  2:325443/149‑1 (MQ=255)
                                                                 tGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCa                                                                                 <  3:119639/149‑1 (MQ=255)
                                                                     cTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCa                                                                             >  7:201550/1‑149 (MQ=255)
                                                                        ggTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACg                                                                               <  3:169162/144‑1 (MQ=255)
                                                                        ggTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGc                                                                              <  3:104601/145‑1 (MQ=255)
                                                                        ggTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCa                                                                             <  8:278787/146‑1 (MQ=255)
                                                                         gTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTc                                                                         <  6:152795/149‑1 (MQ=255)
                                                                              cAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCt                                                                    <  1:184909/149‑1 (MQ=255)
                                                                                gCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTgg                                                                  <  5:190048/149‑1 (MQ=255)
                                                                                gCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTgg                                                                  <  5:176723/149‑1 (MQ=255)
                                                                                gCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTgg                                                                  <  7:62950/149‑1 (MQ=255)
                                                                                      tGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCt                                                            >  5:87567/1‑149 (MQ=255)
                                                                                      tGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCt                                                            <  7:66577/149‑1 (MQ=255)
                                                                                           ccAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCgg                                                       >  3:264208/1‑149 (MQ=255)
                                                                                           ccAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCg                                                        <  1:336381/148‑1 (MQ=255)
                                                                                            cAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTgcg                                                                                      <  1:39739/117‑1 (MQ=255)
                                                                                            cAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTgcg                                                                                      >  2:39739/1‑117 (MQ=255)
                                                                                            cAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGt                                                      >  7:338054/1‑149 (MQ=255)
                                                                                             aGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTg                                                     >  4:152655/1‑149 (MQ=255)
                                                                                                    tCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGAGGCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTAcc                                              <  6:121956/149‑1 (MQ=255)
                                                                                                      aaCCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACGTGGCTATCTGCCTCTCCGGGACCg                                             >  8:98181/1‑148 (MQ=255)
                                                                                                        ccGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGa                                           >  5:19510/1‑148 (MQ=255)
                                                                                                              cGACATCCAGGGTCTCGCCGTTGTCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTg                                    <  1:270949/149‑1 (MQ=255)
                                                                                                                  aTCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGc                                <  8:201550/149‑1 (MQ=255)
                                                                                                                   tCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGcc                               >  6:353660/1‑149 (MQ=255)
                                                                                                                     cAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGt                             >  5:33900/1‑149 (MQ=255)
                                                                                                                      aGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGt                             >  1:336901/1‑148 (MQ=255)
                                                                                                                        ggTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCAc                          >  8:106811/1‑149 (MQ=255)
                                                                                                                              gCCGTTGGCCTGGGCTGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGcc                     <  8:338054/148‑1 (MQ=255)
                                                                                                                              gCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGcca                    >  6:153041/1‑149 (MQ=255)
                                                                                                                              gCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGcca                    >  2:366725/1‑149 (MQ=255)
                                                                                                                                cGTCGGCCTGACCCCGGCCCAGGCCAA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGccac                   >  1:326761/1‑148 (MQ=255)
                                                                                                                                 gTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGccacca                 >  2:268903/1‑149 (MQ=255)
                                                                                                                                        tGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCAcgcc          >  7:26858/1‑149 (MQ=255)
                                                                                                                                             cGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCg     >  6:356483/1‑149 (MQ=255)
                                                                                                                                                ggTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGc  <  5:153041/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
CAGGCTGCCATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGCCTGGGCCGGGGTCAGGCCGA‑CGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGGC  >  NC_002947/936082‑936374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑