| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 975,287 | A→T | 9.2% | intergenic (+136/+33) | ycfJ → / ← suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 975,287 | 0 | A | T | 9.2% | 232.3 / 10.3 | 84 | intergenic (+136/+33) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase |
| Reads supporting (aligned to +/- strand): ref base A (44/32); new base T (4/4); total (48/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.86e-01 | |||||||||||
CGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTGGCCACCGTT > NC_002947/975141‑975433 | cGGGTCTGTTTTTGGCGGTGGGTGTCCCGGCCTATTCGCGGGTAAACCCTATCCTACTGGGGCATTGCTATCCATGTAGGAGGGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCaa < 8:1961/148‑1 (MQ=37) tCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGt > 6:152872/1‑149 (MQ=255) tCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGt > 6:100772/1‑149 (MQ=255) tGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGTTGCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑tt > 5:17684/1‑149 (MQ=255) aTTTCCGGGGTCGGGCCCGGCCTCTTCGCGGGAAACCCCGATCCTACAGGGGCAAGGCGAGCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCTTGAGGTGC‑tttt < 7:81616/149‑1 (MQ=37) ttGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑ttttt < 8:182810/148‑1 (MQ=255) cgctgtCTGTGCCGGCCTCTTCCCGGTAAAACCCTATCCTACAGGGGCAATGCCAACCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTtttgttt < 5:333560/146‑1 (MQ=38) gtCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCg < 5:100772/149‑1 (MQ=255) cgggcccGCCCTCTTCCCGGCTACACCCCAGCCTCCGGGGCCACGCCTATCCATGTAGCACGGTGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGc < 4:245469/144‑1 (MQ=255) ggCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTTCAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCTATCTgc > 8:206030/1‑149 (MQ=255) ggCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTgc > 3:176139/1‑149 (MQ=255) gCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTgcg > 7:31668/1‑149 (MQ=255) tctTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCt > 3:97522/1‑148 (MQ=255) gTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCa > 1:161749/1‑149 (MQ=255) gTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCa > 5:154928/1‑149 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCttt > 5:310421/1‑149 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCttt > 6:196550/1‑149 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCtt > 2:192286/1‑148 (MQ=255) cGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTc < 2:161749/149‑1 (MQ=255) tACAGGGGCAATGCGATCCATGTAGGAGCGGGATTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGTTGA‑TTTTTCTTTGCCCGCAATCTGCGCTTAGCGCTACATGCTTTCTGGCAg > 3:257346/1‑149 (MQ=255) gggCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGc < 2:312850/96‑1 (MQ=255) gggCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCg > 5:37682/1‑149 (MQ=255) gggCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCg > 1:151480/1‑149 (MQ=255) gCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGc > 4:26559/1‑149 (MQ=255) gCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCAACAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGAt > 1:295018/1‑149 (MQ=255) gATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCt > 2:93595/1‑107 (MQ=255) gATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCt < 1:93595/107‑1 (MQ=255) aTCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATgg > 5:161017/1‑148 (MQ=255) cATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCt > 4:153394/1‑139 (MQ=255) cATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCt < 3:153394/139‑1 (MQ=255) tGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcagt > 6:129313/1‑147 (MQ=255) gAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTAcc > 7:189100/1‑149 (MQ=255) gTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCtt > 8:194074/1‑148 (MQ=255) tACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGaa < 6:37682/148‑1 (MQ=255) caCCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGaa < 3:34205/147‑1 (MQ=255) aCCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAg < 2:151480/148‑1 (MQ=255) aCCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAg < 1:192286/148‑1 (MQ=255) ccGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCAc > 1:230059/1‑149 (MQ=255) gAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGa > 4:213258/1‑149 (MQ=255) agatGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATg < 7:194074/149‑1 (MQ=255) agagGTCGGTACAGGCCACGCAAAACCACCAGACACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATg > 2:335247/1‑149 (MQ=255) gagGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGt > 7:97331/1‑149 (MQ=255) gTCGGTACAGGCCACGCAAAACCACCAGTCACTAAAAAGCACCTGTAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCTCTTAGCGCTTGATGCTTTCTGGCAGGTGCGGCTGGATGGCTGTCAGTACCGCCTTGAAGCACTTGATGTTGc < 4:257346/149‑1 (MQ=255) gTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGc < 3:26559/149‑1 (MQ=255) gTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGc < 5:129313/149‑1 (MQ=255) gTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGc > 3:89139/1‑149 (MQ=255) gTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAACCACTTGATGTTGc < 6:17684/149‑1 (MQ=255) tACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTACTGGCAGGTGCGGCTCGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGc > 7:157407/1‑148 (MQ=255) cAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGGTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAAc > 2:108605/1‑149 (MQ=255) aGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcagt > 8:252591/1‑112 (MQ=255) aGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcagt < 7:252591/112‑1 (MQ=255) cGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTgg < 8:189100/149‑1 (MQ=255) aaaaCCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGtt < 5:158040/130‑1 (MQ=255) aaaaCCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGtt > 6:158040/1‑130 (MQ=255) aaaaCCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCt > 3:341100/1‑149 (MQ=255) ccaccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGt < 7:19104/149‑1 (MQ=255) ccaccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGt < 4:176139/149‑1 (MQ=255) caccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTc < 2:230059/149‑1 (MQ=255) caccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTc < 5:196550/149‑1 (MQ=255) caccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTc < 6:59888/149‑1 (MQ=255) caccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTc > 4:118668/1‑149 (MQ=255) ccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGa < 3:232538/149‑1 (MQ=255) ccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGa < 6:333302/149‑1 (MQ=255) ccaGGCACAAAAAAGCACCTCAACAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGa < 8:296267/149‑1 (MQ=255) caGACACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAg < 1:335247/149‑1 (MQ=255) aGGCACAAAAAAGCACCTAAAGAGGTGC‑TTTTTGTTTGCCGGCAATATGCGCTTAGCGCTTCATTCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAgg < 7:206030/149‑1 (MQ=255) gcaaacaaaaaGCACCTCTTGAGGTGCTTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTg > 1:66241/7‑143 (MQ=39) gcaaacaaaaaGCACCTCTTGAGGTGCTTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTg < 2:66241/137‑1 (MQ=39) gCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGaa < 4:97522/149‑1 (MQ=255) aacaaaaaGCACCTCTTGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAg < 6:124888/141‑1 (MQ=255) aacaaaaaGCACCTCTTGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAg > 5:124888/4‑144 (MQ=255) caAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTc > 4:42846/1‑149 (MQ=255) aaaaaaGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCg > 2:172565/1‑149 (MQ=255) aaaaaaGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGCCTGGATGGCAGTCAGTACCGCATTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCg > 4:79351/1‑149 (MQ=255) aaaaGCACCTCTTGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTg > 1:122919/1‑149 (MQ=255) aaaGCACCTCTTGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTgg > 4:357026/1‑149 (MQ=255) aaaGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTgg < 6:161017/149‑1 (MQ=255) aCCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTGGCCAcc > 8:294373/1‑149 (MQ=255) cTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTgg > 3:171978/1‑142 (MQ=255) cTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTgg < 4:171978/142‑1 (MQ=255) cTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTGGCCACCGt > 3:148551/1‑149 (MQ=255) cTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTGGCCACCGt > 6:197645/1‑149 (MQ=255) cTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTGGCCACCGt > 7:232431/1‑149 (MQ=255) cTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTGGCCACCGt > 5:316793/1‑149 (MQ=255) tCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTGGCCACCGtt > 2:94571/1‑149 (MQ=255) | CGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTCGTGGCCACCGTT > NC_002947/975141‑975433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |