Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,219,704 | G→A | 6.5% | R84C (CGC→TGC) | glmP ← | alginate biosynthesis membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,219,704 | 0 | G | A | 6.5% | 182.4 / 2.3 | 61 | R84C (CGC→TGC) | glmP | alginate biosynthesis membrane protein |
Reads supporting (aligned to +/- strand): ref base G (29/28); new base A (2/2); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTGGG > NC_002947/1219559‑1219848 | cAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGgcgc > 3:207837/1‑147 (MQ=255) cAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCaa < 2:304750/149‑1 (MQ=255) aGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAg > 4:165032/1‑149 (MQ=255) aGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAg < 1:248999/149‑1 (MQ=255) aGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAg > 5:69662/1‑149 (MQ=255) ggCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGc > 7:147442/1‑149 (MQ=255) aGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGAc < 3:66264/149‑1 (MQ=255) gCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCa < 2:343285/149‑1 (MQ=255) agagGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGta < 3:165032/149‑1 (MQ=255) tCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGtacata > 4:180250/1‑148 (MQ=255) aCGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGtacataca < 4:207837/148‑1 (MQ=255) cGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAgg < 7:344640/149‑1 (MQ=255) cGCACATCGCAGGGCTCTGAATCGGCGGCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAgg < 6:171081/149‑1 (MQ=255) acaTCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGtt < 8:52960/149‑1 (MQ=255) gCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCa < 4:22733/148‑1 (MQ=255) gCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCa < 8:156713/148‑1 (MQ=255) gCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAg < 4:272467/149‑1 (MQ=255) gCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTaca > 3:189619/1‑149 (MQ=255) tctGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTacac > 2:105841/1‑148 (MQ=255) aaTCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGaaa < 2:299274/148‑1 (MQ=255) gagTCGATTTCGCTCAGTGAATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCACAAGCGGTCGACCAGTACATACAGGGTTGGCAGGTACACGAATTACgg > 4:103906/3‑148 (MQ=255) gCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCACAAGCGGTCGACCAGTACATACAGGGATGCCAGGTACACGAAATACgg > 4:98673/1‑148 (MQ=255) aTTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATc < 6:71468/149‑1 (MQ=255) tttCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCg < 8:147442/149‑1 (MQ=255) ttCGCTCAGTGCATGCGCACCCACACAGTCACCAGCACTGTCGCGTCGATCAGCCAGGCCACTGTGTCCAGCGCCATCTAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACg < 8:337239/139‑1 (MQ=255) ttCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGACAGGCAACTGTGGCCAGCGCCATCGAAGCCTCGATGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTGCACGAAATACg > 7:337239/1‑139 (MQ=255) cAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACAt < 4:270458/149‑1 (MQ=255) aGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACcaca < 6:69662/147‑1 (MQ=255) cATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCa > 8:324927/1‑148 (MQ=255) ccGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAACAACCGAATGATCGACCCCCTGCCaaa > 7:68847/1‑147 (MQ=255) ccGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCaaa > 4:116934/1‑147 (MQ=255) gCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCg > 1:136233/1‑132 (MQ=255) gCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCg < 2:136233/132‑1 (MQ=255) ccACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGAACACGAAATACGGAATGATCGACCACATGCCAAACAGGAtgg > 1:164579/1‑149 (MQ=255) acacaGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATCCGGAATGATCGACCACAAGCCAAACAGGAtggtg > 4:247826/1‑149 (MQ=255) caGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTc > 3:325468/1‑149 (MQ=255) caGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTc < 3:180250/149‑1 (MQ=255) gTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCtt < 1:105841/149‑1 (MQ=255) aCCAGCACGGTCGCGGCGATCCGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACAAACAGGGTTGCCAGGTACACGAAATACGGaa > 7:104776/1‑112 (MQ=255) aCCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAg > 3:330199/1‑149 (MQ=255) gCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCg > 8:106664/1‑149 (MQ=255) cggcgATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAAtgctg > 2:309524/1‑149 (MQ=255) gATCAGCCAGGCCACTGTGGCCAGTGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGAtg > 8:21012/1‑121 (MQ=255) gATCAGCCAGGCCACTGTGGCCAGTGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGAtg < 7:21012/121‑1 (MQ=255) gATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGcc > 8:86656/1‑149 (MQ=255) gCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGGAATAGGGAATGATCGACCACAGGCCAAACCGGATGGTGGGCTTGCGGTCGGCAATGCTGCGCCCCTTg > 8:332920/1‑149 (MQ=255) gCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTg > 2:248488/1‑149 (MQ=255) gCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTg > 8:46144/1‑149 (MQ=255) ccAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGc > 2:354278/1‑149 (MQ=255) aGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGcc > 8:12169/1‑148 (MQ=255) ccACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGGCGGCAATGCTGCGCCCCTTGCcgacg < 4:50018/149‑1 (MQ=255) cACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCcgacga > 6:314410/1‑149 (MQ=255) cACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCcgacga > 6:212492/1‑149 (MQ=255) cATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGt < 2:283593/107‑1 (MQ=255) cATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGt > 1:283593/1‑107 (MQ=255) gCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTGGGCAATCAGGGCGaa < 7:46144/149‑1 (MQ=255) cTCGAGGCACAAGCGGTCGACCAGTACATTCAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTGGGCAATCAGGGCGAAgg < 3:103906/149‑1 (MQ=255) cTCGAGGCACAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTGGGCAATCAGGGCGAAgg < 3:98673/149‑1 (MQ=255) tCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTg > 1:16878/1‑131 (MQ=255) tCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTg < 2:16878/131‑1 (MQ=255) cGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTg < 4:189619/149‑1 (MQ=255) aGGCGCAAGCGGTCGACCTGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGAGGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTggg < 3:247826/149‑1 (MQ=255) | CAGGCGCACAGGCAAGAGGTCACGCACATCGCAGGGCTCTGAATCGGCGTCGATTTCGCTCAGTGCATCCGCACCCACACAGTCACCAGCACGGTCGCGGCGATCAGCCAGGCCACTGTGGCCAGCGCCATCGAAGCCTCGAGGCGCAAGCGGTCGACCAGTACATACAGGGTTGCCAGGTACACGAAATACGGAATGATCGACCACATGCCAAACAGGATGGTGGTCTTGAGGTCGGCAATGCTGCGCCCCTTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTGGG > NC_002947/1219559‑1219848 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |