| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,313,323 | T→A | 6.8% | E445V (GAG→GTG) | rapA ← | RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,313,323 | 0 | T | A | 6.8% | 212.5 / 4.5 | 73 | E445V (GAG→GTG) | rapA | RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base T (36/32); new base A (3/2); total (39/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 | |||||||||||
CGCAGATCACCAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCCAGCAGTTCGCGAATC > NC_002947/1313177‑1313466 | cgcAGATCACCAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAGAGCAACTT‑CCGGGTACAGCTCGGCGTGCTc < 1:217137/149‑1 (MQ=255) aTCACCAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGc > 8:341865/1‑149 (MQ=255) aCCAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTgg > 3:358528/1‑149 (MQ=255) aCCAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGAGCACGCCgagct < 5:145634/148‑5 (MQ=255) ccAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGc < 1:352053/149‑1 (MQ=255) cAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTgg > 2:135496/1‑147 (MQ=255) cAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTgg > 6:360649/1‑147 (MQ=255) aGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTTCCCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCa < 1:44520/149‑1 (MQ=255) tttGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTcgc > 7:167647/1‑149 (MQ=255) ggTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGt > 3:14348/1‑149 (MQ=255) gcgcTTGAGCATCTTCAGGGTGTCGATCAGCCATGTCGACGCGTGGGTCGAAACGCCACAAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCATGGAAG‑GCAACTT‑CCGGGTACAGATCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTAt > 1:234342/1‑149 (MQ=255) cgcTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTg < 7:294245/149‑1 (MQ=255) gAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCgg > 8:31150/1‑149 (MQ=255) gAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCgg > 5:363400/1‑149 (MQ=255) gAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCg < 2:234342/148‑1 (MQ=255) aGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCgg < 1:43201/148‑1 (MQ=255) cATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCg > 1:148695/1‑149 (MQ=255) cATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCg > 4:224263/1‑149 (MQ=255) ccacgtgtCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTggg > 5:282458/5‑147 (MQ=255) cAGGGTGTCGATCAGCCC‑GGCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTggg < 2:324223/147‑1 (MQ=255) cAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTg < 7:31150/145‑1 (MQ=255) tgtCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCggg > 3:181296/1‑149 (MQ=255) aTCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAggg > 4:247252/1‑149 (MQ=255) aTCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAggg < 4:14348/149‑1 (MQ=255) aTCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAggg < 1:135496/149‑1 (MQ=255) aTCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAggg < 3:271528/149‑1 (MQ=255) tCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAgggg > 5:209225/1‑149 (MQ=255) aGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGt < 6:282458/148‑1 (MQ=255) gCCA‑GTCGACGCGTGGGTCGTAACCCCACCAGCGCTCGGCATCTGGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTg < 1:311744/149‑1 (MQ=255) ccA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGc > 5:164645/1‑148 (MQ=255) a‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAAc < 4:187803/149‑1 (MQ=255) gTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACt > 5:256973/1‑149 (MQ=255) aCGCGTGGGTCGAAACGCCACCAGCGCTCGTCATA‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGTGTAGTGGTGCAACTGgcg > 8:179056/1‑149 (MQ=255) tGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCgg > 6:137393/1‑149 (MQ=255) gggTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCggg < 5:27398/149‑1 (MQ=255) ggTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCggg > 7:283985/1‑148 (MQ=255) tCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCgggg > 6:244393/1‑147 (MQ=255) cGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAg < 5:137393/149‑1 (MQ=255) gAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGc > 5:226014/1‑149 (MQ=255) aCGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCt < 3:247252/149‑1 (MQ=255) gCCACCAGCGCTCGGCAGC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCGCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGa < 7:341865/149‑1 (MQ=255) ccaccaGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGaa < 6:275140/149‑1 (MQ=255) ccaccaGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGaa > 2:191719/1‑149 (MQ=255) accaGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATc > 5:2038/1‑149 (MQ=255) gTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACggg > 5:23926/1‑149 (MQ=255) gTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACgg < 6:363400/148‑1 (MQ=255) tCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGgt < 5:360649/149‑1 (MQ=255) tCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGgt < 3:312999/149‑1 (MQ=255) tC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGtt < 4:358528/149‑1 (MQ=255) ggCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTAc > 3:211556/1‑149 (MQ=255) aCTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGaa > 8:3850/1‑149 (MQ=255) aCTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGAGTGCTCGCCGGCTGGAAGGTCGCGGTATTGCTCGTGCCTGGGCAGCGGGAAGGCCTGCACCTGCCGCTCGGCGAAGCCCTGAATAGCCGCAAGGCTGTTACGGaa > 4:223612/1‑149 (MQ=255) cACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACa < 6:226014/147‑1 (MQ=255) ccTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCAcg > 1:119040/1‑149 (MQ=255) ccTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCAcg > 4:368948/1‑149 (MQ=255) gggCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACg < 8:300795/136‑1 (MQ=255) gggCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACg > 7:300795/1‑136 (MQ=255) ggAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTg > 3:307576/1‑149 (MQ=255) aaCTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGc > 3:160996/1‑149 (MQ=255) cTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGa < 6:2038/149‑1 (MQ=255) ccGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATc > 6:76483/1‑148 (MQ=255) ccGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATc < 1:191719/148‑1 (MQ=255) ggTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCcag > 7:30513/1‑148 (MQ=255) tgccagccGGCGAGCACGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCcagcag > 3:304669/8‑149 (MQ=255) ccagccGGCGAGCACGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCCAGCAGtt > 7:31642/6‑149 (MQ=255) cAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACg < 8:202217/111‑1 (MQ=255) cAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACg > 7:202217/1‑111 (MQ=255) gCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCCAGCAGTTcg < 4:345351/149‑1 (MQ=255) gccGGCGAGCACGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTAc > 4:260969/3‑107 (MQ=255) gccGGCGAGCACGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTAc < 3:260969/105‑1 (MQ=255) cTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCCAGCAGTTcgc < 8:167647/149‑1 (MQ=255) ggCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCCAGCAGTTCGCGa < 3:368948/148‑1 (MQ=255) cGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCCAGCAGTTCGCGAATc < 7:3850/149‑1 (MQ=255) | CGCAGATCACCAGCACTTTGGTGCGCTTGAGCATCTTCAGGGTGTCGATCAGCCA‑GTCGACGCGTGGGTCGAAACGCCACCAGCGCTCGTCATC‑GGCCACTTCACCCTGGGCCTGGAAG‑GCAACTT‑CCGGGTACAGCTCGGCGTGCTCGCCGGCTGGCAGGTCGCGGTATTGCTCGGGCGTGGGCAGCGGGTAGGGGTGCAACTGGCGCTCGGGGAAGCCCTGAATCGCCGCACGGGTGTTACGGAACAGCACGCGTCCGGTGCCGTGGCGATCCAGCAGTTCGCGAATC > NC_002947/1313177‑1313466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |