| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,356,405 | G→C | 5.9% | G94A (GGC→GCC) | PP_1181 → | two‑component system response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,356,405 | 0 | G | C | 5.9% | 261.4 / 3.2 | 82 | G94A (GGC→GCC) | PP_1181 | two‑component system response regulator |
| Reads supporting (aligned to +/- strand): ref base G (42/34); new base C (2/3); total (44/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAA > NC_002947/1356260‑1356549 | atcGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGcc < 8:26178/148‑1 (MQ=255) tcGACAGCCAGCCCGCCCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTg < 2:57385/149‑1 (MQ=255) tcGACAGCCAGCCCGACCTGGTGATCCTGGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTg < 6:52348/149‑1 (MQ=255) tcGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTg < 3:188860/149‑1 (MQ=255) gccagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGTGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTg > 7:80378/1‑149 (MQ=255) gccagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGCCCTGGACCTg < 8:140953/149‑1 (MQ=255) ccagccCGACCTGGTGATCCTCGACCTTATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTTGACCAGGTCCAGGGCCTGGACCTgg < 6:9774/149‑1 (MQ=255) acagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTgg > 6:373773/2‑149 (MQ=255) cagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCTAGGTCCAGGCCCTgga < 4:220228/149‑2 (MQ=255) cagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTggg < 2:319627/149‑1 (MQ=255) agccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCTGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGCCCTGGACCTggtc < 6:186981/149‑3 (MQ=255) agccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGgc < 6:9351/149‑1 (MQ=255) gccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGATCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTAACCGCGCGCAGTGATGAACTGGACCACGTCAAGGGCCTGGACCTGGgcg > 6:318995/1‑149 (MQ=255) cccGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCCGGGTGCGCAGCACTCCCTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATTAACTGGACCAGGTCCAGGCCCTGGACCTgg < 1:116727/149‑1 (MQ=255) tGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCgacgac > 5:47254/1‑149 (MQ=255) ggTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCgacgac > 4:316144/1‑148 (MQ=255) gATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACg > 2:292510/1‑149 (MQ=255) aTCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGt < 5:373773/149‑1 (MQ=255) gcGACCTGATGCTCCCCGGCGAGGACGGCCTCAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATCAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGc < 6:13606/148‑1 (MQ=255) aCCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCaaa < 7:246381/149‑1 (MQ=255) ccTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAAc > 6:162590/1‑149 (MQ=255) tCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAAc > 6:377354/1‑141 (MQ=255) tCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAAc < 5:377354/141‑1 (MQ=255) cccGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑ccc > 1:26688/1‑149 (MQ=255) cGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCAc < 3:252076/149‑1 (MQ=255) gACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCCCGCTtgct > 7:23677/1‑149 (MQ=255) ggCCTGTGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATCCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTgctgct < 5:318995/149‑1 (MQ=255) gCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGctgctg < 3:316144/149‑1 (MQ=255) ccTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTgg > 2:264271/1‑149 (MQ=255) aGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCAc < 3:271215/148‑1 (MQ=255) aGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCAc < 3:42452/148‑1 (MQ=255) tCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATc > 2:29633/1‑149 (MQ=255) ccg‑ccgGGTTCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTGTTTCTCACGGCGCGCAGTGATGATCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAgg < 8:23677/149‑1 (MQ=255) g‑ccgGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGcc < 3:250494/149‑1 (MQ=255) gggTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCctg < 1:292510/149‑1 (MQ=255) aGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCa < 8:190612/111‑1 (MQ=255) aGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCa > 7:190612/1‑111 (MQ=255) aGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGc > 3:286954/1‑149 (MQ=255) aGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGc > 4:103358/1‑149 (MQ=255) aGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGc > 7:293610/1‑149 (MQ=255) cAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAAc < 5:192459/149‑1 (MQ=255) cGATCCTCATGCGCACCGGGCGGAGTGATGAACTGGACCACGGCGAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CGCACGCTTGCTGCTGGCACGTATCGAGGCCCTGCTGCGCCGCAGCGAAACCGTGGAc < 8:111876/149‑1 (MQ=255) aTCCTCATGCTAACAGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGATGCTGGCACGTATCAAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAg > 8:319716/1‑149 (MQ=255) tCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCTAACCCGTGCGTCCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACa < 1:107179/149‑1 (MQ=255) tCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAg > 5:349019/1‑149 (MQ=255) tCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAg > 5:72226/1‑149 (MQ=255) tCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAg > 8:6840/1‑149 (MQ=255) cATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTTCGCCGCAGCGAAACCGTGGACAGCAAgc > 5:309404/1‑149 (MQ=255) tGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgcgc < 3:103358/149‑1 (MQ=255) gCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgcgc > 5:79123/1‑148 (MQ=255) gCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgcgc > 4:96961/1‑148 (MQ=255) cTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAACCCGTGGACAGCAAgcgc > 4:68353/1‑147 (MQ=255) tCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTg > 4:161201/1‑134 (MQ=255) tCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTg < 3:161201/134‑1 (MQ=255) tCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAg > 8:225042/1‑149 (MQ=255) tCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAg > 7:31236/1‑149 (MQ=255) cACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAg > 6:120719/1‑148 (MQ=255) ccGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGAc < 4:286954/149‑1 (MQ=255) gcgcgcAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCt > 2:177544/1‑149 (MQ=255) cgcgcAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTg < 8:293610/149‑1 (MQ=255) gcgcAGGCATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTgg < 8:247339/149‑1 (MQ=255) cAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCt > 6:289384/1‑149 (MQ=255) aGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCtt < 6:72226/149‑1 (MQ=255) gTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTc < 5:162590/149‑1 (MQ=255) tgatgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCg > 5:337623/1‑149 (MQ=255) atgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGt > 8:296304/1‑149 (MQ=255) tgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGt < 5:374101/148‑1 (MQ=255) tgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGt > 6:374101/1‑148 (MQ=255) aCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTgcgc > 1:322501/1‑149 (MQ=255) gcccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCg > 2:24872/3‑149 (MQ=255) gACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTTCTGGCACGTATCCATGCCCTGCTGCGCCGCATCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCg < 2:26688/149‑1 (MQ=255) ccAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTa > 7:87343/1‑149 (MQ=255) ccAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTa > 2:271516/1‑149 (MQ=255) ccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTa > 4:180166/1‑149 (MQ=255) cAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTAt < 1:29633/149‑1 (MQ=255) cAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTAt > 5:21662/1‑149 (MQ=255) gTCCAGGGCCTGGACCTGTGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTCCCCATCGGTGAGCTGCGAATCGa > 1:138156/1‑149 (MQ=255) gTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGa > 5:306103/1‑149 (MQ=255) tCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGAc < 7:6840/149‑1 (MQ=255) ccAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGGGTATCGAc > 1:164930/1‑148 (MQ=255) ccAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGAc > 4:14351/1‑148 (MQ=255) cAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACaa > 5:269980/1‑149 (MQ=255) | ATCGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCG‑CCGGGTGCGCAGC‑‑‑CAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCG‑‑CCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAA > NC_002947/1356260‑1356549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |