Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 182,034 | G→A | 18.3% | intergenic (+23/+42) | PP_5SB → / ← PP_0160 | 5S ribosomal RNA/ferrioxamine receptor |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 182,034 | 0 | G | A | 18.3% | 115.9 / 17.3 | 57 | intergenic (+23/+42) | PP_5SB/PP_0160 | 5S ribosomal RNA/ferrioxamine receptor |
Reads supporting (aligned to +/- strand): ref base G (21/24); new base A (8/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.22e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.05e-01 |
AGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGT > NC_002947/181887‑182179 | aGAATTTCTTGACGACCATAGAGCATTGGAACCCCCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATCTGAAAGCCGATCGAGGTTTGGGGTTTACCCATGTTTGAGTAGGGGAGCGTCAACATTAAAACCAAA‑ACACCCTTTATGCg > 1:116743/1‑149 (MQ=2) gacgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCATCGCAGACAg < 5:191077/148‑1 (MQ=255) acgtcCATAGAGCAGTCGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATGGCCGATGGTAGTGTGGGGGTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAgg < 4:39365/148‑1 (MQ=17) cgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTCCTCACTGAT‑GCATCGCCGATGGAAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCATCGCAGACAgg < 1:121374/149‑1 (MQ=17) cgacCATAGAGAATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAggg < 8:312533/148‑1 (MQ=255) ccATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCtt > 6:195398/1‑149 (MQ=255) cATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCttt > 3:232176/1‑149 (MQ=255) tAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACACAA‑AGCCCCTGTCTGCATCGCAGACAGGGGCTTTgg > 1:180075/1‑148 (MQ=255) agCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCtt > 2:127729/1‑149 (MQ=255) cATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCtttt < 3:196946/149‑1 (MQ=255) gAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCggg > 4:343845/1‑149 (MQ=255) ccaccTGATCCCTTCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGttt < 8:180152/149‑1 (MQ=255) caccTGATCCCATGCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGttt < 1:317070/148‑1 (MQ=255) caccTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGttt > 2:317070/1‑148 (MQ=255) atcccatcccGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAACCGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAata < 1:279487/148‑1 (MQ=255) atcccatcccGAACTCAGCAGT‑GAAAC‑CAT‑GCATCGCCGATGGTAGTGTGAGGTATCCCCATGTGAGAGTAGGTCATCGTCAAGATTTTAACCCAA‑AGCCCCTGTCTCCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAata < 1:107912/147‑1 (MQ=21) tcccatcccGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCg < 3:343845/149‑1 (MQ=255) cccatcccGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCg < 4:232176/148‑1 (MQ=255) catcccGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTAAAGATTCAAACCCAA‑AGCCCCTGACTGCCATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGt > 2:260118/1‑148 (MQ=255) atcccGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTa < 5:195398/149‑1 (MQ=255) atcccGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTa > 3:233619/1‑149 (MQ=255) tcccGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGt > 1:122979/1‑146 (MQ=255) ccGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGaa < 1:127729/149‑1 (MQ=255) cGAATTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAAc > 4:91382/1‑149 (MQ=255) cGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAAc < 7:277826/149‑1 (MQ=255) cGAACTCAGCAGT‑GAAAC‑GAA‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAAc < 6:228014/149‑1 (MQ=255) cTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGAt < 4:177282/149‑1 (MQ=255) gcagT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCt > 4:314342/1‑149 (MQ=255) t‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGAc < 2:155208/148‑1 (MQ=255) aaaC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGt > 4:362739/1‑149 (MQ=255) t‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCt < 4:124568/149‑1 (MQ=255) cGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCAGGGTTTCAATATCGGTTAGAACTGATAGCTTACCGTGGCGCTCACAt > 6:367075/1‑149 (MQ=255) gATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTgcg < 3:314342/149‑1 (MQ=255) gTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGctct > 5:187957/1‑149 (MQ=255) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTATGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTAAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCAcc > 3:11954/1‑148 (MQ=255) ggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATg < 1:369274/149‑1 (MQ=255) ggTTTCACCATGTGAGAGTAGGTCATCGTCAATATTCAAACCCAC‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATg < 4:11954/149‑1 (MQ=255) gTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATg > 3:174258/1‑148 (MQ=255) aTCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACAt < 4:233619/149‑1 (MQ=255) gTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGa < 3:91382/148‑1 (MQ=255) gTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAg > 5:385816/1‑149 (MQ=255) tCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATg > 6:256313/1‑147 (MQ=255) aaaCCCAA‑AGCCCCTGTCTGCGATTCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCTCCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGc < 1:260118/149‑1 (MQ=255) aa‑aGCCCCTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCTGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCAt > 8:227090/1‑149 (MQ=255) aa‑aGCCCCTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCAt > 2:219897/1‑149 (MQ=255) aGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTTTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTg > 7:130555/1‑149 (MQ=255) cccTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 1:8380/1‑148 (MQ=255) cccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACACATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 1:29997/1‑148 (MQ=255) cccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAAAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 7:116021/1‑148 (MQ=255) ccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGATCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 2:45590/1‑147 (MQ=255) ccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 2:191098/1‑147 (MQ=255) ccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 4:192241/1‑147 (MQ=255) cTGTCTGCCATGCAGTCAGGGGCTTTGTCTTTTCCGTCTTTCACTATCGGTTAGAAATGATAGCGGCACGTGGCTCTCACATTGCGCTCTTCACCCATGTAGCTGTTGATCAGTCTGGAACATGAGGTGATGTAGCTTTCATTGGTaat < 8:23237/149‑2 (MQ=255) tCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCagtag < 4:38946/105‑1 (MQ=255) tCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCagtag > 3:38946/1‑105 (MQ=255) tCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGgtt > 8:36663/1‑149 (MQ=255) tGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGgttgt > 7:104998/1‑149 (MQ=255) cGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGgttgt < 2:122979/147‑1 (MQ=255) | AGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GAT‑GCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGT > NC_002947/181887‑182179 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |