Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,703,250 G→C 15.2% intergenic (+99/‑68) lysS → / → PP_1497 lysine‑‑tRNA ligase/TetR family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,703,2500GC15.2% 134.2 / 17.0 59intergenic (+99/‑68)lysS/PP_1497lysine‑‑tRNA ligase/TetR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base G (28/22);  new base C (3/6);  total (31/28)
Fisher's exact test for biased strand distribution p-value = 2.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.17e-01

GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCG  >  NC_002947/1703103‑1703394
                                                                                                                                                         |                                                                                                                                                
gTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGc                                                                                                                                                 <  5:19668/149‑1 (MQ=255)
 tCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCt                                                                                                                                               <  4:287963/149‑1 (MQ=255)
   gATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑GCTGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCttt                                                                                                                                             <  3:113047/149‑2 (MQ=38)
   gATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCtt                                                                                                                                              <  6:217332/149‑1 (MQ=255)
    aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTg                                                                                                                                             <  8:42074/149‑1 (MQ=255)
     tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTg                                                                                                                                             >  5:168587/1‑148 (MQ=255)
       cgcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGACCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTa                                                                                                                                           <  6:123803/148‑1 (MQ=255)
       cgcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAg                                                                                                                                          <  5:110093/149‑1 (MQ=255)
       cgcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTa                                                                                                                                           <  2:112048/148‑1 (MQ=255)
       cgcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTa                                                                                                                                           <  5:72240/148‑1 (MQ=255)
        gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAgg                                                                                                                                         <  6:98041/149‑1 (MQ=255)
        gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAg                                                                                                                                          >  6:270913/1‑148 (MQ=255)
           aCGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGc                                                                                                                                      <  8:305256/149‑1 (MQ=255)
             gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGCgg                                                                                                                                    <  5:145901/149‑1 (MQ=255)
             gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTCGTCAGT‑‑‑GCTGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGCgg                                                                                                                                    <  7:185380/149‑1 (MQ=37)
              tCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCggg                                                                                                                                   <  6:168587/149‑1 (MQ=255)
               cATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGCGGGt                                                                                                                                  <  5:270913/149‑1 (MQ=255)
                aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGt                                                                                                                                  <  8:304701/148‑1 (MQ=255)
                      ttCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTAccc                                                                                                                            <  1:189607/148‑1 (MQ=255)
                         ccGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCcgcg                                                                                                                         >  6:312058/1‑148 (MQ=255)
                                tGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGt                                                                                                                                            <  1:110985/122‑1 (MQ=255)
                                tGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTAAGT‑‑‑ACCGGACTCTTC‑‑‑GCGGGTAAACCCCCTCCTACAAAGGCCATGt                                                                                                                                            >  2:110985/1‑122 (MQ=255)
                                   gTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGGTTACCCGCGAAGGGGCCAg                                                                                                               >  3:288902/1‑148 (MQ=255)
                                       gCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTTGGAGCGGCAAATACCCGGGGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGc                                                                                                                  >  1:116815/1‑147 (MQ=25)
                                           gCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑AACGGCCTCTTC‑‑‑GCGGGTAAACCCCCAACTAAAAAGGCCTTGTAGCAGCGGGTTTTCCCGCGAAGGGCCCAGCACAGAcc                                                                                                       >  8:274670/1‑147 (MQ=38)
                                              tgagtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGa                                                                                                                                        <  1:190139/112‑1 (MQ=255)
                                              tgagtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGa                                                                                                                                        >  2:190139/1‑112 (MQ=255)
                                                       tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGGCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACCCCCCCATg                                                                                          >  3:93347/1‑149 (MQ=255)
                                                          aCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACACGCTCCTCAAAAGGCCTTGTAGGAGCGGGTTTACCCGCGCAGGGGCCAGCACTGACGCAACACCCCCATGAgg                                                                                       >  7:269721/1‑149 (MQ=38)
                                                                    tttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccc                                                                                 >  4:32150/1‑145 (MQ=255)
                                                                    tttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccc                                                                                 <  3:32150/145‑1 (MQ=255)
                                                                       cGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGcc                                                                                                                                                <  6:79316/79‑1 (MQ=255)
                                                                       cGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGcc                                                                                                                                                >  5:79316/1‑79 (MQ=255)
                                                                         tgggggcTTTTTCTTGCCTTAAGCTTTTTGTTGTCAGT‑‑‑ACCGGCCACTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGacac                                                                        <  7:274670/145‑1 (MQ=255)
                                                                                tttttCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCAt                                                                 >  5:111535/1‑149 (MQ=255)
                                                                                 ttttCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATg                                                                >  5:113365/1‑149 (MQ=255)
                                                                                      ttGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GGGGGTAAACCCGCTCCTAAAAACGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGa                                                           <  5:312058/149‑1 (MQ=255)
                                                                                                cTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTACTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCACCCCTGACGAAACACACCCATGAGGTATCCCCCGTGACACCCGCCAGGCCGGACCAAGGcgcc                                                 >  4:92023/1‑149 (MQ=37)
                                                                                                     tgttggCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCAACAAAGGCCTTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGccgccg                                             <  8:209669/148‑1 (MQ=255)
                                                                                                                    cGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGGACTGACGAAACACCCCCCTGAGGGATCCCCCGTGACCCCCGCCAGGCCGGGCCAAGGCGCCGCCGGCCTCGCCCccgc                                >  6:116966/1‑149 (MQ=25)
                                                                                                                           ttC‑‑‑GCGGGTAAACCCGCTCCGACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTTTCCCCCGTGTCCCCCGCCCAGCCTGACCAAGGCGCCGCCGGCCTCGc                                      >  3:68464/1‑136 (MQ=37)
                                                                                                                             c‑‑‑gcgGGTAACCCCGCTCCTCCAACGCCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGc                          <  6:113365/146‑1 (MQ=38)
                                                                                                                                  cgGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa                     <  5:271495/149‑1 (MQ=255)
                                                                                                                                         aCCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc               >  7:118270/1‑148 (MQ=255)
                                                                                                                                          cccGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa             >  3:193252/1‑149 (MQ=255)
                                                                                                                                          cccGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa             >  3:29820/1‑149 (MQ=255)
                                                                                                                                           ccGCTCCTAAAACGGCCTTGTAGGTGGGGGTTAACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt            <  4:93347/149‑1 (MQ=255)
                                                                                                                                            cGCTCCTACAAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa           >  3:324738/1‑149 (MQ=255)
                                                                                                                                             gCTCCTACAAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAc          >  7:10084/1‑149 (MQ=255)
                                                                                                                                               tCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc         >  7:294211/1‑148 (MQ=255)
                                                                                                                                                 cTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg      >  1:349881/1‑149 (MQ=255)
                                                                                                                                                  tACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCgccgcc                                              <  2:134201/108‑1 (MQ=255)
                                                                                                                                                  tACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCgccgcc                                              >  1:134201/1‑108 (MQ=255)
                                                                                                                                                  tACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg     >  7:24516/1‑149 (MQ=255)
                                                                                                                                                     aaaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg  >  2:68134/1‑149 (MQ=255)
                                                                                                                                                     aaaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg  >  1:259737/1‑149 (MQ=255)
                                                                                                                                                     aaaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg  >  5:164431/1‑149 (MQ=255)
                                                                                                                                                      aaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTAGCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg  >  3:359472/1‑148 (MQ=255)
                                                                                                                                                      aaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGGATCCCCCGTGACACCCTCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATCCCAAGGCCg  >  7:243334/1‑148 (MQ=255)
                                                                                                                                                         |                                                                                                                                                
GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCG  >  NC_002947/1703103‑1703394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: