Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,703,252 C→T 14.3% intergenic (+101/‑66) lysS → / → PP_1497 lysine‑‑tRNA ligase/TetR family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,703,2520CT14.3% 126.9 / 12.9 56intergenic (+101/‑66)lysS/PP_1497lysine‑‑tRNA ligase/TetR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (27/21);  new base T (3/5);  total (30/26)
Fisher's exact test for biased strand distribution p-value = 4.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.17e-01

TCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGA  >  NC_002947/1703104‑1703399
                                                                                                                                                          |                                                                                                                                                   
tCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCt                                                                                                                                                    <  4:287963/149‑1 (MQ=255)
  gATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑GCTGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCttt                                                                                                                                                  <  3:113047/149‑2 (MQ=38)
  gATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCtt                                                                                                                                                   <  6:217332/149‑1 (MQ=255)
   aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTg                                                                                                                                                  <  8:42074/149‑1 (MQ=255)
    tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTg                                                                                                                                                  >  5:168587/1‑148 (MQ=255)
      cgcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGACCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTa                                                                                                                                                <  6:123803/148‑1 (MQ=255)
      cgcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAg                                                                                                                                               <  5:110093/149‑1 (MQ=255)
      cgcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTa                                                                                                                                                <  5:72240/148‑1 (MQ=255)
      cgcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTa                                                                                                                                                <  2:112048/148‑1 (MQ=255)
       gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAgg                                                                                                                                              <  6:98041/149‑1 (MQ=255)
       gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAg                                                                                                                                               >  6:270913/1‑148 (MQ=255)
          aCGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGc                                                                                                                                           <  8:305256/149‑1 (MQ=255)
            gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGCgg                                                                                                                                         <  5:145901/149‑1 (MQ=255)
            gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTCGTCAGT‑‑‑GCTGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGCgg                                                                                                                                         <  7:185380/149‑1 (MQ=37)
             tCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCggg                                                                                                                                        <  6:168587/149‑1 (MQ=255)
              cATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCCCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGCGGGt                                                                                                                                       <  5:270913/149‑1 (MQ=255)
               aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGt                                                                                                                                       <  8:304701/148‑1 (MQ=255)
                     ttCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTAccc                                                                                                                                 <  1:189607/148‑1 (MQ=255)
                        ccGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCcgcg                                                                                                                              >  6:312058/1‑148 (MQ=255)
                               tGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGt                                                                                                                                                 <  1:110985/122‑1 (MQ=255)
                               tGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTAAGT‑‑‑ACCGGACTCTTC‑‑‑GCGGGTAAACCCCCTCCTACAAAGGCCATGt                                                                                                                                                 >  2:110985/1‑122 (MQ=255)
                                  gTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGGTTACCCGCGAAGGGGCCAg                                                                                                                    >  3:288902/1‑148 (MQ=255)
                                      gCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTTGGAGCGGCAAATACCCGGGGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGc                                                                                                                       >  1:116815/1‑147 (MQ=25)
                                          gCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑AACGGCCTCTTC‑‑‑GCGGGTAAACCCCCAACTAAAAAGGCCTTGTAGCAGCGGGTTTTCCCGCGAAGGGCCCAGCACAGAcc                                                                                                            >  8:274670/1‑147 (MQ=38)
                                             tgagtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGa                                                                                                                                             >  2:190139/1‑112 (MQ=255)
                                             tgagtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGa                                                                                                                                             <  1:190139/112‑1 (MQ=255)
                                                      tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGGCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACCCCCCCATg                                                                                               >  3:93347/1‑149 (MQ=255)
                                                         aCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACACGCTCCTCAAAAGGCCTTGTAGGAGCGGGTTTACCCGCGCAGGGGCCAGCACTGACGCAACACCCCCATGAgg                                                                                            >  7:269721/1‑149 (MQ=38)
                                                                   tttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccc                                                                                      >  4:32150/1‑145 (MQ=255)
                                                                   tttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccc                                                                                      <  3:32150/145‑1 (MQ=255)
                                                                      cGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGcc                                                                                                                                                     <  6:79316/79‑1 (MQ=255)
                                                                      cGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGcc                                                                                                                                                     >  5:79316/1‑79 (MQ=255)
                                                                        tgggggcTTTTTCTTGCCTTAAGCTTTTTGTTGTCAGT‑‑‑ACCGGCCACTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGacac                                                                             <  7:274670/145‑1 (MQ=255)
                                                                               tttttCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCAt                                                                      >  5:111535/1‑149 (MQ=255)
                                                                                ttttCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATg                                                                     >  5:113365/1‑149 (MQ=255)
                                                                                     ttGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GGGGGTAAACCCGCTCCTAAAAACGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGa                                                                <  5:312058/149‑1 (MQ=255)
                                                                                               cTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTACTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCACCCCTGACGAAACACACCCATGAGGTATCCCCCGTGACACCCGCCAGGCCGGACCAAGGcgcc                                                      >  4:92023/1‑149 (MQ=37)
                                                                                                    tgttggCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCAACAAAGGCCTTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGccgccg                                                  <  8:209669/148‑1 (MQ=255)
                                                                                                                   cGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGGACTGACGAAACACCCCCCTGAGGGATCCCCCGTGACCCCCGCCAGGCCGGGCCAAGGCGCCGCCGGCCTCGCCCccgc                                     >  6:116966/1‑149 (MQ=25)
                                                                                                                          ttC‑‑‑GCGGGTAAACCCGCTCCGACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTTTCCCCCGTGTCCCCCGCCCAGCCTGACCAAGGCGCCGCCGGCCTCGc                                           >  3:68464/1‑136 (MQ=37)
                                                                                                                            c‑‑‑gcgGGTAACCCCGCTCCTCCAACGCCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGc                               <  6:113365/146‑1 (MQ=38)
                                                                                                                                 cgGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa                          <  5:271495/149‑1 (MQ=255)
                                                                                                                                        aCCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc                    >  7:118270/1‑148 (MQ=255)
                                                                                                                                         cccGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa                  >  3:193252/1‑149 (MQ=255)
                                                                                                                                         cccGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa                  >  3:29820/1‑149 (MQ=255)
                                                                                                                                          ccGCTCCTAAAACGGCCTTGTAGGTGGGGGTTAACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt                 <  4:93347/149‑1 (MQ=255)
                                                                                                                                           cGCTCCTACAAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa                >  3:324738/1‑149 (MQ=255)
                                                                                                                                            gCTCCTACAAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAc               >  7:10084/1‑149 (MQ=255)
                                                                                                                                              tCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc              >  7:294211/1‑148 (MQ=255)
                                                                                                                                                cTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg           >  1:349881/1‑149 (MQ=255)
                                                                                                                                                 tACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCgccgcc                                                   <  2:134201/108‑1 (MQ=255)
                                                                                                                                                 tACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCgccgcc                                                   >  1:134201/1‑108 (MQ=255)
                                                                                                                                                 tACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg          >  7:24516/1‑149 (MQ=255)
                                                                                                                                                    aaaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg       >  1:259737/1‑149 (MQ=255)
                                                                                                                                                    aaaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg       >  5:164431/1‑149 (MQ=255)
                                                                                                                                                    aaaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg       >  2:68134/1‑149 (MQ=255)
                                                                                                                                                     aaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTAGCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg       >  3:359472/1‑148 (MQ=255)
                                                                                                                                                     aaGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGGATCCCCCGTGACACCCTCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATCCCAAGGCCg       >  7:243334/1‑148 (MQ=255)
                                                                                                                                                         ccTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGa  >  4:233744/1‑149 (MQ=255)
                                                                                                                                                          |                                                                                                                                                   
TCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGT‑‑‑ACCGGCCTCTTC‑‑‑GCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGA  >  NC_002947/1703104‑1703399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: