| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 182,036 | T→C | 17.5% | intergenic (+25/+40) | PP_5SB → / ← PP_0160 | 5S ribosomal RNA/ferrioxamine receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 182,036 | 0 | T | C | 17.5% | 121.0 / 18.7 | 57 | intergenic (+25/+40) | PP_5SB/PP_0160 | 5S ribosomal RNA/ferrioxamine receptor |
| Reads supporting (aligned to +/- strand): ref base T (22/25); new base C (8/2); total (30/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.30e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.54e-01 | |||||||||||
GACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGT > NC_002947/181897‑182179 | gacgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCATCGCAGACAg < 5:191077/148‑1 (MQ=255) acgtcCATAGAGCAGTCGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATGGCCGATGGTAGTGTGGGGGTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAgg < 4:39365/148‑1 (MQ=17) cgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTCCTCACTGATGCATCGCCGATGGAAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCATCGCAGACAgg < 1:121374/149‑1 (MQ=17) cgacCATAGAGAATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAggg < 8:312533/148‑1 (MQ=255) ccATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCtt > 6:195398/1‑149 (MQ=255) cATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCttt > 3:232176/1‑149 (MQ=255) tAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACACAA‑AGCCCCTGTCTGCATCGCAGACAGGGGCTTTgg > 1:180075/1‑148 (MQ=255) agCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCtt > 2:127729/1‑149 (MQ=255) cATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCtttt < 3:196946/149‑1 (MQ=255) gAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCggg > 4:343845/1‑149 (MQ=255) ccaccTGATCCCTTCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGttt < 8:180152/149‑1 (MQ=255) caccTGATCCCATGCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGttt < 1:317070/148‑1 (MQ=255) caccTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGttt > 2:317070/1‑148 (MQ=255) atcccatcccGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAACCGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAata < 1:279487/148‑1 (MQ=255) atcccatcccGAACTCAGCAGT‑GAAAC‑CATGCATCGCCGATGGTAGTGTGAGGTATCCCCATGTGAGAGTAGGTCATCGTCAAGATTTTAACCCAA‑AGCCCCTGTCTCCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAata < 1:107912/147‑1 (MQ=21) tcccatcccGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCg < 3:343845/149‑1 (MQ=255) cccatcccGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCg < 4:232176/148‑1 (MQ=255) catcccGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTAAAGATTCAAACCCAA‑AGCCCCTGACTGCCATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGt > 2:260118/1‑148 (MQ=255) atcccGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTa < 5:195398/149‑1 (MQ=255) atcccGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTa > 3:233619/1‑149 (MQ=255) tcccGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGt > 1:122979/1‑146 (MQ=255) ccGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGaa < 1:127729/149‑1 (MQ=255) cGAATTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAAc > 4:91382/1‑149 (MQ=255) cGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAAc < 7:277826/149‑1 (MQ=255) cGAACTCAGCAGT‑GAAAC‑GAAGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAAc < 6:228014/149‑1 (MQ=255) cTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGAt < 4:177282/149‑1 (MQ=255) gcagT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCt > 4:314342/1‑149 (MQ=255) t‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGAc < 2:155208/148‑1 (MQ=255) aaaC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGt > 4:362739/1‑149 (MQ=255) tGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCt < 4:124568/149‑1 (MQ=255) cGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCAGGGTTTCAATATCGGTTAGAACTGATAGCTTACCGTGGCGCTCACAt > 6:367075/1‑149 (MQ=255) gATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTgcg < 3:314342/149‑1 (MQ=255) gTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGctct > 5:187957/1‑149 (MQ=255) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTATGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTAAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCAcc > 3:11954/1‑148 (MQ=255) ggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATg < 1:369274/149‑1 (MQ=255) ggTTTCACCATGTGAGAGTAGGTCATCGTCAATATTCAAACCCAC‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATg < 4:11954/149‑1 (MQ=255) gTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATg > 3:174258/1‑148 (MQ=255) aTCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACAt < 4:233619/149‑1 (MQ=255) gTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGa < 3:91382/148‑1 (MQ=255) gTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAg > 5:385816/1‑149 (MQ=255) tCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATg > 6:256313/1‑147 (MQ=255) aaaCCCAA‑AGCCCCTGTCTGCGATTCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCTCCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGc < 1:260118/149‑1 (MQ=255) aa‑aGCCCCTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCTGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCAt > 8:227090/1‑149 (MQ=255) aa‑aGCCCCTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCAt > 2:219897/1‑149 (MQ=255) aGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTTTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTg > 7:130555/1‑149 (MQ=255) cccTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 1:8380/1‑148 (MQ=255) cccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACACATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 1:29997/1‑148 (MQ=255) cccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAAAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 7:116021/1‑148 (MQ=255) ccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGATCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 2:45590/1‑147 (MQ=255) ccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 2:191098/1‑147 (MQ=255) ccTGTCTGCATCGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGt > 4:192241/1‑147 (MQ=255) cTGTCTGCCATGCAGTCAGGGGCTTTGTCTTTTCCGTCTTTCACTATCGGTTAGAAATGATAGCGGCACGTGGCTCTCACATTGCGCTCTTCACCCATGTAGCTGTTGATCAGTCTGGAACATGAGGTGATGTAGCTTTCATTGGTaat < 8:23237/149‑2 (MQ=255) tCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCagtag < 4:38946/105‑1 (MQ=255) tCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCagtag > 3:38946/1‑105 (MQ=255) tCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGgtt > 8:36663/1‑149 (MQ=255) tGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGgttgt > 7:104998/1‑149 (MQ=255) cGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGgttgt < 2:122979/147‑1 (MQ=255) | GACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGT‑GAAAC‑GATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAA‑AGCCCCTGTCTGCGATGCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGACCGTGGCGCTCACATTGCGCTCTTCACCCATGTAGCAGTAGTTCAGGCTGGCACATGAGGTGATGTAGCTTTCATTGGTAAGGTTGT > NC_002947/181897‑182179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |