| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,559 | C→A | 22.8% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,559 | 0 | C | A | 22.8% | 170.1 / 44.8 | 83 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (32/31); new base A (12/7); total (44/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.21e-01 | |||||||||||
GTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAA > NC_002947/195422‑195705 | gtgaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAAtt > 8:248901/1‑148 (MQ=35) tgaccgtgaccCTGTCCAACGGCCAGGTGATCACTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 6:116586/149‑1 (MQ=25) cgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 6:194379/1‑148 (MQ=35) cccTTTCCATCGGCCATGTCATCACTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCACTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATAGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTg < 6:283121/149‑1 (MQ=14) cccTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACt > 3:307353/1‑148 (MQ=39) aCGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCTCAGGGCAGCGTCGATTTCCAGACCCCGCCCAATGACGTATACAACAACGGTTCGCCCGACAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGa > 1:243666/1‑148 (MQ=14) aCGGCCAGGTCATCACTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAAt < 3:114338/149‑1 (MQ=40) cAGGTCATCACTGTTGAAGCCGTCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGTCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGAc < 7:339599/149‑1 (MQ=255) atcaCTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGCCCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGc > 6:11950/1‑149 (MQ=255) atcaCTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGc > 2:197967/1‑149 (MQ=255) aCTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAAAGGTTCGACCGTCATCGTCACCATCGATAACGCCACAGGCGGTAATTTCGAG‑CAAATGACCCCTAATCAGACCCCGGCTCa > 8:246111/1‑149 (MQ=11) ttGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGAc > 5:68538/1‑148 (MQ=37) gAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 5:366433/1‑149 (MQ=37) aaGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCAc < 6:167691/148‑1 (MQ=37) aGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa > 1:248162/1‑149 (MQ=37) gCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 2:243666/149‑1 (MQ=37) gCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 5:362779/1‑149 (MQ=37) gCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 1:343500/1‑149 (MQ=37) cc‑cAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg < 6:22522/149‑1 (MQ=34) cc‑cAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg < 7:248901/149‑1 (MQ=34) c‑cAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg < 3:330166/149‑1 (MQ=34) cAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 4:307353/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 5:194379/149‑1 (MQ=34) gggCAGCGTAGATTTCCAGTCCCCGGCCAATGACCTCTACAACAACGGTTCGACCGTCACCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 1:92037/149‑1 (MQ=11) cAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 1:68161/132‑1 (MQ=34) cAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt > 2:68161/1‑132 (MQ=34) gCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcacc < 5:11950/149‑1 (MQ=38) aTTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCTAATCCGACCCCGGCTCAGACCAAGCTCAACGACTCGGt > 4:34887/1‑136 (MQ=255) aTTTCCAGACCCCGGCCAATGACGTCTAAAACAACGGTTCGACAGTAAGCGGAACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCTACCCCGGCTCAGACCTCGATCAACGACTCGGt < 3:34887/136‑1 (MQ=11) tttCCAGACCCCGTCCAATGACGTCTACAACAACGGATCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACcg < 7:246111/149‑1 (MQ=255) ccAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACcgcgc > 1:266863/1‑148 (MQ=39) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGAc < 4:159173/89‑1 (MQ=38) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGAc > 3:159173/1‑89 (MQ=38) aGACCCCGTCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc < 6:362779/149‑1 (MQ=255) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGCCCCTGa > 5:254179/1‑149 (MQ=255) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGa < 6:366433/149‑1 (MQ=39) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCCTCACCAACGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGCCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGa > 7:298058/1‑149 (MQ=255) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 7:267418/112‑1 (MQ=35) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt > 8:267418/1‑112 (MQ=35) gcgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGc < 8:37043/146‑1 (MQ=0) gCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCTCGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGc < 3:175302/149‑1 (MQ=255) aaTTACTTCTAAAAAAAGGTTTGGACCGTCAGCGTAACAATCTATAACGCAACGGGGGTTAATTTCGTG‑CAATTTACCCCTAATCCTACCCCGGATAATACCAGTATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAg < 2:350506/149‑1 (MQ=2) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGc > 5:384167/1‑149 (MQ=17) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACgggctcgc < 1:197967/149‑7 (MQ=255) gACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGccc > 6:133422/1‑149 (MQ=17) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCg > 3:303745/1‑149 (MQ=17) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGt < 6:159359/149‑1 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc > 6:226550/1‑149 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc > 3:326922/1‑149 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTc > 5:257776/1‑149 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTc > 3:164027/1‑149 (MQ=17) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACAACCGACACCCTGACGGCGAGCCCGTCg > 2:336103/1‑148 (MQ=255) caacaaCGGTTCGCCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACCATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 1:330054/1‑149 (MQ=255) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 7:290873/1‑149 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 4:326922/149‑1 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCTCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 2:312282/1‑149 (MQ=12) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 7:334580/1‑148 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 5:213563/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 7:207191/1‑148 (MQ=37) cGACCGTCAGCGTCACCATCGAGAACGCCACAGGCTGTAATTTAGAG‑CAACTGACGCCGAATACGACCCCGGCTCAGACCACGATCAACGAGTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg < 8:39891/148‑1 (MQ=11) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 6:384167/148‑1 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 8:207191/149‑1 (MQ=37) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 2:248162/149‑1 (MQ=38) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 7:264192/1‑149 (MQ=39) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc < 2:343500/149‑1 (MQ=39) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 4:164027/149‑1 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 2:307455/1‑149 (MQ=17) ccATCGACAACGCCACAGGCGGTAATTTCGAG‑CTACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 5:9356/149‑1 (MQ=255) cATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 2:13667/1‑149 (MQ=39) cATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 2:284939/1‑149 (MQ=39) cATCGAGAACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCCCGATGAACGACTCGGGCGACACCACTACCGCGACCCTGACGGCGCGGCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 3:211851/1‑149 (MQ=11) tCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg > 2:328893/1‑149 (MQ=39) agaACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc > 5:284355/1‑149 (MQ=39) agaACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 1:336103/149‑1 (MQ=17) gaACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc < 5:226550/149‑1 (MQ=39) gaACGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc > 4:305267/1‑149 (MQ=17) aaCGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 3:303913/149‑1 (MQ=17) aCGCCACCGGCGGTAATTTCGAG‑CAACTGACCACGAATCCGACCCCGGCTCAGACCACGATCAACGACTCTGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGTAGGCGGCGTGATCACTTACACCGTGACCCt < 8:298058/148‑1 (MQ=255) aCGCCACAGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt > 5:72522/1‑148 (MQ=17) cGCCACCCGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 4:128080/149‑1 (MQ=255) gCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 2:46524/1‑149 (MQ=39) ccACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc < 1:46524/149‑1 (MQ=39) cacaGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 7:266199/1‑148 (MQ=17) cacaGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCa < 5:133422/149‑1 (MQ=17) aCCGGCGGTAATTTCGAG‑CAACTGCCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTAGACCGTGACCCTGAGcca > 6:286210/1‑147 (MQ=255) | GTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACC‑CAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG‑CAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAA > NC_002947/195422‑195705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |