Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,898,983 | T→C | 10.8% | intergenic (+53/‑467) | PP_t18 → / → PP_1703 | tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,898,983 | 0 | T | C | 10.8% | 125.1 / 5.3 | 46 | intergenic (+53/‑467) | PP_t18/PP_1703 | tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase |
Reads supporting (aligned to +/- strand): ref base T (22/19); new base C (2/3); total (24/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.83e-01 |
GATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTG > NC_002947/1898844‑1899127 | gATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCAAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTGAGGGTCGc > 4:261084/1‑149 (MQ=21) tataGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCCTAAGGTCGCttt < 8:165572/148‑1 (MQ=21) tataGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGCTCGCCGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTACCAGGGCCCACTGAACACCAGGAAGTAAAAAAGAAAGCGACCTAACGGTCGCtttt > 8:107226/1‑149 (MQ=11) taGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCtttttt > 5:276146/1‑149 (MQ=34) gcgcAGCGGTTGTTCTGGCGGTTACACTACCGCCCTGTCCCGCCGGGGGTCGCGGGTTCGAGTCCCGGCCGCTCCGCAATATTCCACTTCCAGGGCCCACTCAACACCCGTAATAAAAAAAAAACGCGACTCTAAGGTCGctttcttt < 2:354028/148‑1 (MQ=2) gcgcAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCttttttt < 6:213021/148‑1 (MQ=34) gCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCt < 3:230749/149‑1 (MQ=39) ggTATTTCAGTCTTTTAGAATACGGGCCTGTCTCGGGGGGGGTCGCGTGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAATAAAA‑‑‑AAAGCGACCCTAAGGTCGCTTTCTTTTTTACttccgg < 4:219085/149‑6 (MQ=2) ttAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCCCTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCggt > 2:308842/1‑147 (MQ=255) aGAATACTGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGttt < 1:199201/148‑1 (MQ=255) aGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGttt < 7:107226/148‑1 (MQ=255) gacccccGGCGTGACAGGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTAc > 2:274628/6‑149 (MQ=255) gAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACTCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTa < 7:312749/148‑1 (MQ=255) aCGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAggg > 3:275321/1‑149 (MQ=255) gggggTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAg < 4:339492/149‑1 (MQ=255) tCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCGTTTTTTATTTATGCATCATGGAAAAGTTTAAGCCCAGCAAAAAAGGGCTAgattgg > 1:179547/1‑144 (MQ=17) gcgGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGcc > 4:243146/1‑149 (MQ=255) cgGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTTTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCa < 1:274628/149‑1 (MQ=255) gTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCActc < 2:300947/149‑1 (MQ=255) tCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTcc < 6:276146/149‑1 (MQ=255) cTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAATGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTc < 1:305633/149‑1 (MQ=255) tCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCaaa < 3:243146/149‑1 (MQ=255) tCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCaaa > 3:335000/1‑149 (MQ=255) tCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCaaa > 7:355824/1‑149 (MQ=255) cACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAAcc > 5:182568/1‑149 (MQ=255) ttCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCt < 1:211298/67‑1 (MQ=255) ttCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCt > 2:211298/1‑67 (MQ=255) ggCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATAAAGCAATCGTTTACGCCCTGCAACAAGGGGCTAGGTGCGCCCCACTTCTTCCCGCAGCGTCAGCCCCTCAAACCCCTCCTCGa > 3:143112/1‑149 (MQ=37) cACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCAc > 5:273518/1‑149 (MQ=255) aaCACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAAccc < 7:299484/132‑1 (MQ=255) aaCACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTcc > 5:166625/1‑136 (MQ=255) aaCACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTcc < 6:166625/136‑1 (MQ=255) acCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTAAGCCCTGCAACAACGGGCTAGCTGCGCCACACTTATTCCCGCAGCGTCAGCACCTCAAACACGTCCTCGATCACCGGCAtat > 8:39305/1‑147 (MQ=255) ccGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTcc > 7:344898/1‑149 (MQ=255) cGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCt < 4:335000/149‑1 (MQ=255) ggAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCg < 1:273062/139‑1 (MQ=255) ggAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCg > 2:273062/1‑139 (MQ=255) agaaataaaaaaagCGACCCTAAGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGAAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGa > 6:175323/7‑149 (MQ=255) gaaataaaaaaagCGACCCTAAGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGa > 6:80645/6‑148 (MQ=255) aaaaaGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATg > 2:93495/1‑149 (MQ=255) aaaaGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATgg > 1:226642/1‑149 (MQ=255) aagaaagCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGa < 2:179547/149‑1 (MQ=255) agCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAggg > 7:92770/1‑147 (MQ=255) gACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAggg > 1:56204/1‑144 (MQ=255) gACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAggg < 2:56204/144‑1 (MQ=255) gACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTg < 7:39305/149‑1 (MQ=255) | GATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTG > NC_002947/1898844‑1899127 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |