Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,969,983 | G→A | 7.4% | P118P (CCG→CCA) | mtnA → | methylthioribose‑1‑phosphate isomerase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,969,983 | 0 | G | A | 7.4% | 155.1 / 3.0 | 56 | P118P (CCG→CCA) | mtnA | methylthioribose‑1‑phosphate isomerase |
Reads supporting (aligned to +/- strand): ref base G (24/26); new base A (2/2); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 |
GCCCTTGAAGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAGGGCAATGCCCAGGCCCTGCTCACCTTCGGCAACG > NC_002947/1969837‑1970131 | gCCCTTGAAGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCgg > 2:205764/1‑148 (MQ=255) cccTTGAAGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGgaa < 5:131116/149‑1 (MQ=255) ccgtGAAGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGCGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGgaag < 8:258071/146‑1 (MQ=255) cTTGAAGAGCGGATGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGgaag > 5:360516/1‑148 (MQ=255) ttGAAGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGgaagaa > 2:72130/1‑149 (MQ=255) gAAGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGgaagaa < 5:275506/147‑1 (MQ=255) aaGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAagaaga < 1:183529/148‑1 (MQ=255) gagCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCTCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGTAAGAAGACGt < 2:9792/149‑1 (MQ=255) ggCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTg < 2:96826/149‑1 (MQ=255) gCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCAGAAGAAGACGTTCTgg > 1:25731/1‑149 (MQ=255) gCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTggcggc > 3:241756/1‑149 (MQ=255) gAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCt > 1:59987/1‑149 (MQ=255) aGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTgg < 3:158483/149‑1 (MQ=255) tgcggagATCGTGAAAGGGACCTTCCAGACGACTTTCTCACCCTCCCCGATCCTCTACCTACCGCCTCCAAATTGTTCTCTCCGCTTAACCGCATGCGCTATCGTCTTCTGTTCCTGCTTCCTGAAGAAGACGTTCTTGCTGCGCTTGa < 4:285802/148‑1 (MQ=255) ggcggcGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGa < 8:214079/149‑1 (MQ=255) ggAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAgg < 2:367448/140‑1 (MQ=255) ggAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAgg > 1:367448/1‑140 (MQ=255) ggAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCgg > 7:228944/1‑149 (MQ=255) ggAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCgg > 2:281211/1‑149 (MQ=255) aaTGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTgg < 2:59987/149‑1 (MQ=255) aaTGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGACGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTgg > 1:95539/1‑149 (MQ=255) gACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCa < 4:136654/148‑1 (MQ=255) ccTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTc < 2:237188/149‑1 (MQ=255) cTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCa < 8:228944/149‑1 (MQ=255) tGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCAc > 7:71512/1‑148 (MQ=255) aGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGa > 8:171113/1‑147 (MQ=255) gacTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGATGGAGGCTGAAGCGGTGGCCATTCACTCCAGCGa > 6:308620/1‑149 (MQ=255) tctcACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGAcc > 5:220064/1‑146 (MQ=255) aCCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGagag < 1:205764/147‑1 (MQ=255) aCCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGagag < 4:241756/147‑1 (MQ=255) ccTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAgg < 4:293593/110‑1 (MQ=255) ccTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAgg > 3:293593/1‑110 (MQ=255) cTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCaa > 7:220868/1‑149 (MQ=255) gCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCAGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCt < 2:25731/149‑1 (MQ=255) gCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATACGCGAGCGTCTGCTGTGCCTGCGTCCAGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCt > 6:215605/1‑149 (MQ=255) ccGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCt > 7:213563/1‑148 (MQ=255) cGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGa < 3:210623/149‑1 (MQ=255) cTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCcag > 8:258737/1‑149 (MQ=255) ccgccAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTg > 3:282047/1‑98 (MQ=255) ccgccAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTg < 4:282047/98‑1 (MQ=255) ccgccAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAggg > 5:45115/1‑148 (MQ=255) ccAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATc < 6:45115/149‑1 (MQ=255) cAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGCACCAGAAGCGTATc > 8:170111/1‑148 (MQ=255) cTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGc < 7:258737/149‑1 (MQ=255) gTTCTGGGCTCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCt < 6:220064/147‑1 (MQ=255) gTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCt < 8:213563/147‑1 (MQ=255) gTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGa > 7:306215/1‑149 (MQ=255) gcTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGc > 2:25139/1‑148 (MQ=255) aaCCGCATACGCGAGCGTCTGCTGTGCCTGCGTCCAGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATc < 5:215605/148‑1 (MQ=255) ccGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCCCGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAgg > 7:342532/1‑149 (MQ=255) ccGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAgg < 1:25139/149‑1 (MQ=255) gCATGCGCGAGCGTCTGCTGTGCCTGCGTCACGAAGAAGACGTTCTGGCGCCGCTGGAGGCTGAAGCGGTCGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGTGTATCGAGCTGATCCCTCGCCATCAggg > 5:174575/1‑148 (MQ=255) gctgTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAGGGCAATGCCCAGGCCCTGc > 7:111112/1‑149 (MQ=255) ctgTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAGGGCAATGCGCAGGCCCTg < 2:95539/147‑1 (MQ=255) ctgTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAGGGCAATGCCCAGGCCCTGCt < 8:111112/149‑1 (MQ=255) cTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAGGGCGATGCCCAGGCCCTGCTCACCtt > 6:99581/1‑149 (MQ=255) cGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAGGGCAATGCCCAGGCCCTGCTCACCTTCg < 1:281211/148‑1 (MQ=255) ggAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACAGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGACGACATCAGGGCAATGCCCAGGCCCTGCTCACCTTCGGCAACg > 8:155588/1‑149 (MQ=255) | GCCCTTGAAGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGACCTTGAAGACGACTTTCTCACCCTCGCCGAGGCGCGCCCTACCGCCGCCAACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGTGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCTGAAGCGGTGGCCATTCACGACAGCGACCGAGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGCCATCAGGGCAATGCCCAGGCCCTGCTCACCTTCGGCAACG > NC_002947/1969837‑1970131 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |