| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,961 | G→A | 5.6% | S489S (TCG→TCA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,961 | 0 | G | A | 5.6% | 416.3 / 9.3 | 142 | S489S (TCG→TCA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base G (65/69); new base A (6/2); total (71/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.32e-01 | |||||||||||
Only 100 of 145 total aligned reads displayed.
TCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCG > NC_002947/195813‑196102 | tCTACATCTACGGCTCGACCGTCAGCGTCACCATCGAGAGCTCCACTGGCGGCTACTTCGAACAGCTGACCCCGAACCCGCCGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCg < 5:367724/149‑1 (MQ=14)tCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCGCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCg < 3:49438/149‑1 (MQ=255) cTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGG > 8:3978‑M1/1‑149 (MQ=255) caacaaCGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGG < 1:341284‑M1/146‑1 (MQ=255) acaacGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 6:349896/149‑1 (MQ=39) caacGGCTGGACCGTGTGCGTCACCATCGAGTGCGCCACTGGGGGCATCTTCGAAGAGCTGACCCCGAAGCGGACGCCGGCTGAGACCACGTTCAAGGACTCGGTCGACACCAGCACCGCGACCCTGACGGCGAGGCCGTCGGTctcag < 6:86307/149‑5 (MQ=14) acGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGCACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGCCTCGGTCGACACCACCACCGCGACCCTGACCGCGAGCCCGTCGGTCACCg > 7:269010/1‑147 (MQ=255) gCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc > 8:8829/1‑149 (MQ=38) cTCGATCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 7:340009/1‑149 (MQ=38) cTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 4:164906/1‑149 (MQ=38) gACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 7:8829/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 1:367748/1‑149 (MQ=37) gTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 1:14571/1‑149 (MQ=37) aGCGTCACCATCGAGCTCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACAACGATCAAAGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 6:309671/148‑1 (MQ=255) aGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 3:164906/148‑1 (MQ=37) gCGTCACCATCGAGAGCGCGACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAcc < 8:252762/149‑1 (MQ=37) tCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTac < 6:325027/149‑1 (MQ=37) tCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTa > 5:101710/1‑148 (MQ=37) ccATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCCCGATCAACGACTCGGTCGACACCACCCCCGCGACCCTGACGGCGCGCCCGTCGGTCACCGAAGGCCGCGTGATCACCTCCAcc > 7:274381/1‑149 (MQ=11) ccATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 5:148667/1‑121 (MQ=38) ccATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGt < 6:148667/121‑1 (MQ=38) cATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCg > 8:54540/1‑149 (MQ=37) agagCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc > 2:6963/1‑136 (MQ=37) agagCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 1:6963/136‑1 (MQ=37) agagCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGAcc < 3:265299/149‑1 (MQ=37) cgcCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGa < 5:133831/149‑1 (MQ=34) cgcCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGa < 5:216821/149‑1 (MQ=34) gcCACTGGCGGCAACTTCGAACTGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCTGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAg < 3:94966/149‑1 (MQ=21) gcCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAg < 7:196246/149‑1 (MQ=34) ccACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAg > 6:21275/1‑148 (MQ=34) gcggcAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATc < 5:244731/147‑1 (MQ=34) gcggcAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCt < 7:52753/149‑1 (MQ=34) gcggcAACCTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATc < 3:335959/147‑1 (MQ=21) gcggcAACCTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATc < 3:341515/147‑1 (MQ=21) cggcAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTg > 3:126298/1‑149 (MQ=34) cggcAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTg < 7:3978/149‑1 (MQ=34) gAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGc < 5:339/148‑1 (MQ=34) cTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACg < 2:107814/141‑1 (MQ=34) cTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACg > 1:107814/1‑141 (MQ=34) tGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATc < 6:302610/129‑1 (MQ=35) gACCCCGAACCCGACGCCGGCTCAGACAACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATACTGCCCAGACGCCGGTAAcag > 7:164183/1‑147 (MQ=255) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCCCCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACtgt > 7:124377/1‑149 (MQ=255) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGa > 6:129039/1‑115 (MQ=35) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGa > 8:59036/1‑149 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGa > 4:340313/1‑149 (MQ=39) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGAc > 8:36421/1‑149 (MQ=39) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGAcc > 7:132620/1‑149 (MQ=39) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGAcc < 4:126298/149‑1 (MQ=39) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGAcc < 4:189193/149‑1 (MQ=39) gAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGAccc > 2:348806/1‑149 (MQ=39) aCCCAACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTg > 1:372806/1‑149 (MQ=255) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc < 8:259186/93‑1 (MQ=33) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGACACCGAAGGCGGCGTGATc > 7:259186/1‑93 (MQ=18) cGCCGGCTCACACCACGACCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑Ac < 3:202940/149‑1 (MQ=255) ggCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACg > 7:59717/1‑146 (MQ=39) tCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCaaa > 3:274021/1‑149 (MQ=39) cACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTa > 8:101198/1‑149 (MQ=39) cACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGGGAGgggcgcggtggtggtgtggaccgagtcgttgatcggggtctgagccgggggcggattcggggtgaggtgctcgaaatttccgccggtggcggt > 2:266863‑M1/1‑56 (MQ=255) cGATCATCGACTGGGTCGACAGCTCCTGAGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGTCCGTGTGCAATCATGCCCTGACGCCGGTAACTGTGACCCTTTCCA‑ACGGCCAAACGATTAcc < 5:202337/149‑1 (MQ=14) cGATCACCGACTCTGTCGACACCACCACCGCGACCCTGACGGCGAGCGCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCTGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTAcc < 8:274381/149‑1 (MQ=255) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGggtcgcggtagtggtgtcgaccgagtcgttgatcgtggtctgagccggcgtcgggttcgggggcagttgctcgaaattaccgcccgtggcgttctc > 2:286359‑M1/1‑53 (MQ=255) gATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCg > 4:244736/1‑149 (MQ=39) cAACGACTCCGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTg < 8:269010/149‑1 (MQ=255) aaCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑Ac < 6:307915/129‑1 (MQ=40) aaCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑Ac > 5:307915/1‑129 (MQ=40) aaCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGa < 7:220353/149‑1 (MQ=39) aCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGaa < 8:132620/149‑1 (MQ=39) gACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGc < 3:244736/149‑1 (MQ=39) tCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCggg > 6:255839/1‑149 (MQ=39) ggTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGt > 2:337745/1‑148 (MQ=39) tCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAg > 1:238000/1‑141 (MQ=39) tCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAg < 2:238000/141‑1 (MQ=39) gACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAAc < 1:337745/149‑1 (MQ=39) acacCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAAc < 5:338307/148‑1 (MQ=39) acacCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAAc > 6:338307/1‑148 (MQ=39) accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc > 1:180561/1‑147 (MQ=39) accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 2:59671/149‑1 (MQ=39) ccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCAGACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 1:255238/149‑1 (MQ=255) ccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 7:101198/149‑1 (MQ=39) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg < 2:372806/149‑1 (MQ=39) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg < 4:274021/149‑1 (MQ=39) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 3:324831/1‑149 (MQ=39) caccGCGACCCTGACGGCGAGCCCGTCGGggtcgcggtggtggcatcgaccgagtcgttgatcgtggtctgagccggggtcggattcg > 5:303367‑M1/1‑29 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGggtcgcggtggtggcatcgaccgagtcgttgatcgtggtctgagccggggtcggattcg < 6:303367‑M1/88‑60 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg > 5:120260/1‑147 (MQ=39) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCg < 6:182294/149‑1 (MQ=39) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGaa > 2:19475/1‑126 (MQ=38) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTCACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGa > 4:84059/1‑148 (MQ=255) ccTGACGGCGAGCCCGTCGGggtcgcggtagtggtgtcgaccgagtcgttgatcgtggtctgagccggcgtcgggttcggggtcagttgctcgaaattaccgcccgtg > 3:370583‑M1/1‑20 (MQ=255) ccTGACGGCGAGCCCGTCGGggtcgcggtagtggtgtcgaccgagtcgttgatcgtggtctgagccggcgtcgggttcggggtcagttgctcgaaattaccgcccgtg < 4:370583‑M1/108‑89 (MQ=255) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGc < 5:37574/123‑1 (MQ=38) ccTGACGGCGAGCCCGTCAGggtcgcggttgtggttgcgaccgagtcgttgatcgtggtctgagccggggtcgg < 5:304042‑M1/74‑55 (MQ=255) ccTGACGGCGAGCCCGTCAGggtcgcggtggtggcatcgaccgagtcgttgatcgtggtctgagccggggtcggattcggggtcagttgctagaaattaccgcctgtggcgttctcgatggtgacactgacggtcgaaccgttgttg > 2:138763‑M1/1‑20 (MQ=255) ccTGACGGCGAGCCCGTCAGggtcgcggtggtggcatcgaccgagtcgttgatcgtggtctgagccggcgtcggatgcggggtcagttgctcgaaattaccgccggtggcgttctcgatggtgacactgaca > 7:88094‑M1/1‑20 (MQ=255) ccTGACGGCGAGCCCGTCAGggtcgcggtggtggcatcgaccgaggcgttgatcgtggtctgagccggcgtcggatgcggggtcagttgctcgaaattaccgccggtggcgttctcgatggtgacactgaca < 8:88094‑M1/132‑113 (MQ=255) cTGACGGCGAGCCCGTCAGggtcgcggtagtggtgtcgaccgagtcgttgatcgtggtctgagccggcgtcgggttcggggtcagttgctcgaaattaccgcccgtggcgttctcgatggtgacgctgaccgtcgaaccgttgttg > 6:80698‑M1/1‑19 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCa < 7:59036/149‑1 (MQ=39) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGa < 6:35642/149‑1 (MQ=39) gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGAccc > 8:252176/1‑149 (MQ=39) gCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 5:21275/149‑1 (MQ=39) | TCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCG > NC_002947/195813‑196102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |