| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,100,007 | A→C | 21.6% | intergenic (‑118/‑87) | PP_1875 ← / → PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,100,007 | 0 | A | C | 21.6% | 59.7 / 3.0 | 31 | intergenic (‑118/‑87) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (14/9); new base C (5/2); total (19/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAC > NC_002947/2099859‑2100154 | cGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCa < 5:355786/149‑1 (MQ=255) ttCCCGTTCCTTGCGCTGTGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGACCGG‑TCACCCAGGTCACGC‑ATAGCCCCAggag > 7:160967/1‑147 (MQ=255) cGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAAc < 8:224712/149‑1 (MQ=255) cGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAAc < 2:40988/149‑1 (MQ=255) gccTTCCGCTGCGCAAGCATAGCCGAATCGCCCCGGCTGCGGGTGGGGCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGc < 6:206655/147‑1 (MQ=255) cTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCaa < 8:190444/148‑1 (MQ=255) gcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGa < 2:74917/149‑1 (MQ=255) ccGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCgg < 6:323892/143‑1 (MQ=255) ccGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCgg > 5:323892/1‑143 (MQ=255) ccGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCAGC‑GGGCGTGCCCGT‑TCCACCAGGGTCAGC‑ATAGCCCAAGGCTGAACGCAAGCCCT‑GAGGGACCGGGCacca > 4:244181/1‑146 (MQ=255) ggTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTTCCCGG‑TCCCCCAGGGACAGC‑TTAGCCCCAGGCGGAACGCCAGCCCT‑GTGGGCGCGGGCAA‑GCCCGCGGAGGGGCGCGCCG‑CGGcc > 6:367624/1‑149 (MQ=38) gtctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCATTGCCGT‑TACCCCACCTAAACC‑TTAACCCCCCGCGGAACCCACGCCCG‑GTGGGAGCCGGGCA‑GCCCCCGGCGGGGCGCGCAGCCGGccccc > 4:117100/1‑148 (MQ=255) tctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTTCCCGT‑TACCCCAGGTACAGC‑GTTGCCCCCCGGGGCACGCCCGCCCG‑GTGGGGGCCGGCCA‑GCCCCCGGCGGGGCGCCCCG‑GGGcccccca > 5:381078/1‑146 (MQ=255) ttCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGGGTGGCCCGTAACCCAC‑GGGA‑AGCATTGGCCCCCGGGGGAAC‑CAAGCCCG‑GTGGGGGCGGGGCA‑CCCCCCGGCGGGGCGCGGCG‑CGGCCCCCcaaaaa > 8:6738/1‑148 (MQ=255) ttCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TACCAAAGGTACAGC‑TTAGCCCCCGGCGGGACGCAAGCCCG‑GTGGGCGCGGGCCA‑GCCCGCGGAGGGGCGCGCCG‑CGGCCCCCAAAAAAc > 7:71097/1‑149 (MQ=255) gggCGCCCCCCCGC‑GGGGTGGCCCGT‑CCCCCCCGGTCCCGC‑TT‑CCCCCCCGCCGTACCCCACCCCTGGGGGGCGGGGGAAC‑GCCCGCGGAGGGGCGCGCAG‑TGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc < 6:381078/147‑1 (MQ=255) cccTCCGC‑GGGCTTGGCCGT‑TCCCACAGGTACAGC‑TTAGCCCCCGGCTGGACGCAAGCCCG‑GTGGGAGCGGGGCA‑GCCCGCGGGGGGGCGCGCCG‑GGGCCCCCCAAAAACTGAGGTTGTTTGGGGTCGTGATGGACGCTCGCGTGTTCg > 2:250996/1‑149 (MQ=255) cTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGAc > 5:266577/1‑149 (MQ=255) ttGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAC‑GCCCGCGGCGGGGCGCGCAG‑CGGCCCCCAAAAACCTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGAcc > 1:6805/1‑149 (MQ=255) cGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGcc > 4:297387/1‑149 (MQ=255) cacaGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGccagtacc > 5:226916/1‑143 (MQ=255) cacaGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCg > 8:228700/1‑149 (MQ=255) acaGGTACAGC‑TTAGCCCCAGGCTGAACGCAAACCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCgg > 1:233472/1‑149 (MQ=255) tACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGAAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTg > 5:343162/1‑149 (MQ=255) aGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcg > 2:232672/1‑149 (MQ=255) tttggcccTGGCTCAAGGCAAGCCCT‑GGGGGTG‑GGGCAACGCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgcgc < 5:345584/144‑1 (MQ=255) ccccCGGCTGAACGCACGCCGT‑GGGGGAGCGGGAAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTg < 5:367624/149‑1 (MQ=255) ccccAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCtt > 3:4992/1‑148 (MQ=255) ccAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTg > 7:273931/1‑147 (MQ=255) ccAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTg < 8:273931/147‑1 (MQ=255) ccAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGaa < 1:232672/149‑1 (MQ=255) cAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAc < 6:266577/149‑1 (MQ=255) | CGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGC‑GGGCTTGCCCGT‑TCCCACAGGTACAGC‑TTAGCCCCAGGCTGAACGCAAGCCCT‑GTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAG‑CGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAC > NC_002947/2099859‑2100154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |