| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,351 | C→G | 23.7% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,351 | 0 | C | G | 23.7% | 234.4 / 72.4 | 118 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (47/42); new base G (14/14); total (62/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.31e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 118 total aligned reads displayed.
ACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAC > NC_002947/196205‑196494 | aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt > 5:258471/1‑149 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 8:94490/1‑149 (MQ=39) cGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc < 2:8252/149‑1 (MQ=39) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCg < 2:291654/149‑1 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 6:312009/149‑1 (MQ=39) cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg < 8:82351/149‑1 (MQ=39) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 3:362222/1‑149 (MQ=39) cTCGGTCGACACCACTACAGCGACCCTGACGCCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTCCCCAGACGCCGGTGACAGTGACCATGTCCAACGGCCAAACCAATACCCTTGAAGCCg > 3:119212/1‑149 (MQ=14) cGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc < 3:94792/149‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc < 1:347081/148‑1 (MQ=39) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaag > 2:184219/1‑148 (MQ=38) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc > 1:48578/1‑149 (MQ=40) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAACCCATTACCGTTGAAGCCGGCAAGAccc > 1:289607/1‑149 (MQ=255) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc > 7:113619/1‑147 (MQ=17) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCCGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc > 2:82240/1‑147 (MQ=38) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc < 3:168075/127‑1 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg < 2:80170/149‑1 (MQ=37) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg > 3:341722/1‑148 (MQ=37) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg < 4:341722/148‑1 (MQ=37) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCCGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCa > 1:31944/1‑147 (MQ=37) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCCGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCa < 2:31944/147‑1 (MQ=37) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGGGCC‑ATAAGAAATCATGCCAAAACCCCGTTGCAATTGACCATTTCAAACGGCAAAACAATTACCTTTGAAGCCGGAAAAACCAAgg > 1:111678/1‑149 (MQ=2) tACCGCGACACTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 5:143948/1‑147 (MQ=11) caCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCa > 4:323320/2‑149 (MQ=9) caCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCa > 6:101254/2‑149 (MQ=9) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc > 3:269738/1‑149 (MQ=34) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 4:245711/1‑149 (MQ=12) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 4:290583/149‑1 (MQ=12) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt < 1:75606/149‑1 (MQ=34) ccTGACGGCGAGCCCGTCGGTCACCGAAGGTGGCGTGATC‑ACTTACACCAT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGATGAAGCCGGCAAAACCCAGGGCAGCGTCGact > 8:324018/1‑147 (MQ=11) ggCGAGCCCGTCGGTCACCGAAGGCCGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa < 1:82240/149‑1 (MQ=21) cGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACGGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAcc > 5:11796/1‑149 (MQ=11) gAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCa > 2:110392/1‑131 (MQ=34) gAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCa < 1:110392/131‑1 (MQ=34) cGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGCGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc < 3:107713/128‑1 (MQ=255) cGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGCGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc > 4:107713/1‑128 (MQ=255) ggTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 5:371007/148‑1 (MQ=34) gTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACCGCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGCGCAGCGTCGACTTCCAGACCCCGGCGAAt > 1:249473/1‑148 (MQ=11) tCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 1:11952/149‑1 (MQ=255) aCCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 7:5851/1‑149 (MQ=34) ccGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 3:63672/149‑1 (MQ=34) cGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 8:61859/1‑148 (MQ=34) cGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 4:329684/1‑148 (MQ=34) aaGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTac < 7:146788/149‑1 (MQ=255) ggcggcGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa < 8:215221/149‑1 (MQ=34) cggcgTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 4:17118/1‑142 (MQ=255) cggcgTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc < 3:17118/142‑1 (MQ=255) ggcgTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGCTTTCCAGCGCCCGGCGAATGACGTCTacaac > 4:110707/1‑147 (MQ=255) cgTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc > 4:302444/1‑119 (MQ=11) cgTGATC‑ACTTACACCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc < 3:302444/119‑1 (MQ=11) gTGATC‑ACTTACACCTT‑GACC‑CTTAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCGAAACGATTACCGTTGAAGCCGGCAAAAGCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACgg < 2:69179/149‑1 (MQ=11) gATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 8:172783/1‑149 (MQ=34) gATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 5:159520/1‑149 (MQ=34) aTC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:48578/148‑1 (MQ=34) ttACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 5:197080/144‑1 (MQ=32) ttACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 6:197080/1‑144 (MQ=32) ttACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg > 8:119663/1‑149 (MQ=34) ttACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAACCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGCTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg > 4:250716/1‑149 (MQ=21) acacCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 7:61859/148‑1 (MQ=34) acacCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 1:181218/1‑148 (MQ=34) acacCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 2:219316/1‑148 (MQ=34) acacCGT‑GACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 1:176528/148‑1 (MQ=255) ccGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 2:111678/149‑1 (MQ=35) gACC‑CTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa > 7:3929/1‑149 (MQ=11) c‑cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 2:181238/1‑149 (MQ=37) c‑cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 1:22062/1‑149 (MQ=37) c‑cTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 3:31262/1‑118 (MQ=11) c‑cTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 3:26399/1‑118 (MQ=11) c‑cTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc < 4:26399/118‑1 (MQ=11) catGAGCAACACTGCCAAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc < 4:31262/116‑1 (MQ=11) tGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaa > 8:293726/1‑121 (MQ=255) tGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaa < 7:293726/121‑1 (MQ=255) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATGTCCATACACCGGCGAATGCCGTCTACAACAACGGTTCGACTGGCAGTCTACCAATCGAGAACg > 6:354830/1‑149 (MQ=11) cTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt < 4:241638/139‑1 (MQ=37) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc > 3:338407/1‑149 (MQ=39) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg < 3:329684/149‑1 (MQ=39) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCAGCGGTAATTTCGa < 1:181238/149‑1 (MQ=255) aCAGTGACACTGTCAAACGTCCAAAGCATTCCCGTTGAAGCCTGCAAAACCCCGGGCAGCTGCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 5:354830/149‑1 (MQ=14) cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg < 7:99724/149‑1 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTTTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 3:88141/1‑148 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 3:334887/145‑1 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc > 4:334887/1‑145 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 4:149582/1‑148 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 2:102217/1‑148 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGc < 4:338407/149‑1 (MQ=38) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 8:10331/143‑1 (MQ=37) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa > 7:10331/1‑143 (MQ=37) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 5:155466/90‑1 (MQ=255) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 6:155466/1‑90 (MQ=255) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa > 3:181036/1‑141 (MQ=37) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 4:181036/141‑1 (MQ=37) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa > 8:17153/1‑149 (MQ=37) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACt > 7:24440/1‑145 (MQ=37) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 5:6627/1‑149 (MQ=37) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 3:157772/1‑149 (MQ=37) aCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt > 4:335721/1‑149 (MQ=38) cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 3:149582/149‑1 (MQ=38) cAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGTATCCGAc > 5:248942/1‑149 (MQ=255) aCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 4:299969/125‑1 (MQ=38) aCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa > 3:299969/1‑125 (MQ=38) | ACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGT‑GACC‑CTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAC > NC_002947/196205‑196494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |