| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 9.9% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 9.9% | 738.1 / 55.8 | 282 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (123/131); new base T (18/10); total (141/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.80e-02 | |||||||||||
Only 100 of 286 total aligned reads displayed.
CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA > NC_002947/196912‑197179 | ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg > 6:209681/1‑149 (MQ=31) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg < 1:254489/149‑1 (MQ=14) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 3:319570/149‑1 (MQ=32) ccGGTGACAGTGACCCTGTCCACCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCACGGCAGCGTCGATTTCCAGACCCCGCCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGCACGCCACAGGCGGTa > 5:29382/1‑148 (MQ=255) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 1:300012/149‑1 (MQ=35) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 5:359868/149‑1 (MQ=35) accgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 7:47075/146‑1 (MQ=1) accgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:223147/146‑1 (MQ=1) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGGGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:29833/149‑1 (MQ=21) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg < 5:340317/148‑1 (MQ=34) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:83215/149‑1 (MQ=34) ccgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACGCCGGCGAATGACGTCTACAACAA‑CGGTTCGTCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 3:258450/147‑1 (MQ=2) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGCCCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 7:131943/1‑148 (MQ=17) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 2:72737/1‑148 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 5:83983/149‑1 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa > 6:326950/1‑149 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 8:118939/149‑1 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt > 7:312409/1‑138 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCAACAAAAA‑AGGTTCGACCCACAGCGTCACCATCGAGAACCCCACAGGCGGTAATTTGGATCACCTgt > 6:9356/1‑148 (MQ=11) cTGTCCAACGGCCATACCATTACCGTTGAAGCCGTCAAGACACAGGGCAGCGTCGATTTCCAGACCCCGTCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGTACGCCACAGGCGGTAATTTGGAGCAACTGAc < 7:249682/149‑1 (MQ=11) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 5:114363/1‑149 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 4:77828/149‑1 (MQ=32) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc > 6:316818/1‑149 (MQ=32) ccAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc < 5:316818/148‑1 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 2:330373/1‑148 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGa > 4:275/1‑148 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGa > 4:21831/1‑148 (MQ=32) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt < 3:275/149‑1 (MQ=32) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt < 5:150797/149‑1 (MQ=32) cGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc > 6:146648/1‑149 (MQ=33) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 3:250054/149‑1 (MQ=34) gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 1:186095/1‑148 (MQ=34) ccAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:98210/129‑1 (MQ=32) ccAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa < 3:21831/149‑1 (MQ=34) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg > 7:281724/1‑149 (MQ=37) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg > 5:221341/1‑149 (MQ=37) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt < 3:224691/149‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAg < 1:88893/149‑1 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 8:273230/1‑148 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa > 7:208778/1‑147 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTAGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCAAAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 7:39891/1‑148 (MQ=255) aGCCGGCCAGCCCCACGGCAGCGTCGCTTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTGGACCGTCATCGTCACCATCGATAACGCCTCAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa < 6:291757/149‑1 (MQ=11) gCCGGCAAGACCCAGGGCAGCGTCGATTTCGAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt > 1:33177/1‑149 (MQ=37) gCCGGCAAGAACCAGGGCAGCGTCTATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CTGTTCGACCGTCAGCGTCAAAATCGAGAACGCCACAGTCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 6:181160/149‑1 (MQ=11) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATc < 1:363123/149‑1 (MQ=37) gCAAGACCCAGGGCATCGTCGATTTCCAGACCGCGGCGAATGACGTCTACAAGAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 5:158985/149‑1 (MQ=255) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 1:106096/149‑1 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 2:204648/149‑1 (MQ=37) cAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 6:273662/1‑120 (MQ=32) cAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 5:273662/120‑1 (MQ=32) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTc > 6:110477/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 8:19305/1‑149 (MQ=34) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 6:55332/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 5:43512/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 6:122033/149‑1 (MQ=34) gggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCg < 4:362222/149‑1 (MQ=34) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 1:7700/149‑1 (MQ=35) cAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 8:243627/1‑144 (MQ=34) aGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc < 2:242569/149‑1 (MQ=37) gCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCTGCCCACGATCAACGACTCGGTCGATGcc > 4:103356/1‑149 (MQ=255) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca > 2:105898/1‑149 (MQ=38) gTCGATTTCCAGACACCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACACGGTCGATGccac > 4:51544/1‑149 (MQ=255) gTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac < 4:298699/149‑1 (MQ=255) cGACTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCACGAAACCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacac > 2:286557/1‑147 (MQ=255) atctCCAGACCCCGGCGAATGACGTCGACAACAA‑CGGTGCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCaccacc < 8:201797/146‑1 (MQ=255) ttCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc > 5:6709/1‑149 (MQ=21) ttCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc > 8:294696/1‑149 (MQ=21) cAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAc > 2:66957/1‑149 (MQ=39) cAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATATCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAc < 3:51544/149‑1 (MQ=255) aGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACTGTCGGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc > 8:216587/1‑149 (MQ=255) aGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGt > 2:371092/1‑71 (MQ=34) gACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc < 8:281724/149‑1 (MQ=39) cccGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 8:323213/1‑149 (MQ=39) cccGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 4:2365/1‑149 (MQ=39) ccGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCt < 4:1557/146‑1 (MQ=39) cGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg < 8:79912/149‑1 (MQ=39) aTGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGCGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc > 4:120772/1‑149 (MQ=37) cGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGt < 1:66957/149‑1 (MQ=37) tCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCg > 1:148105/1‑86 (MQ=33) tCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCg < 2:148105/86‑1 (MQ=33) tCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 2:26851/149‑1 (MQ=37) tACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 4:306610/1‑149 (MQ=37) acaacaA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 6:381945/1‑148 (MQ=37) acaacaA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 2:351239/1‑148 (MQ=37) caacaa‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCTGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTc < 3:263758/148‑1 (MQ=17) caacaa‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg < 5:199431/106‑1 (MQ=32) aacaa‑cGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc < 4:267650/122‑1 (MQ=25) aacaa‑cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACACCGAATCCGACCCCGGCTCAGACCACGa > 7:82539/1‑94 (MQ=18) acaa‑cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 2:171478/149‑1 (MQ=37) caa‑cGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 5:139087/1‑148 (MQ=21) caa‑cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 3:145404/1‑148 (MQ=37) caa‑cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTAACGGCGAGCCCGTCGGTCAcc > 6:339961/1‑148 (MQ=37) aa‑cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc < 8:140616/55‑1 (MQ=35) aa‑cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 6:70697/1‑148 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 7:323213/149‑1 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 3:2365/149‑1 (MQ=37) cGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg < 7:19305/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg > 4:252668/1‑126 (MQ=38) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 3:153698/1‑148 (MQ=37) ccGTCAGCGGCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCACCTGACCCCGAATCCGACCCCGGCTCAGCCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTa < 7:165748/149‑1 (MQ=255) | CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAA‑CGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA > NC_002947/196912‑197179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |