Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,255,975 | T→C | 7.7% | intergenic (+35/‑669) | asd → / → PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,255,975 | 0 | T | C | 7.7% | 141.8 / 2.9 | 52 | intergenic (+35/‑669) | asd/PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase |
Reads supporting (aligned to +/- strand): ref base T (24/24); new base C (2/2); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.71e-01 |
CGCAAGCTGAACATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAG > NC_002947/2255827‑2256120 | cgcAAGCTGAACATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGt > 3:136119/1‑149 (MQ=255) tGAACATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTTGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTg > 1:186833/1‑149 (MQ=255) aaCATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCg > 6:120476/1‑149 (MQ=255) aCATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCgg > 5:171708/1‑149 (MQ=255) gggTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGTCACCAGTGCGGTAttt < 3:202412/149‑1 (MQ=255) gggTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTAttt > 5:171117/1‑149 (MQ=255) cGCAGTACCTGGGCGCGGTCACCGGGGGGGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTAttttttt < 6:296446/149‑1 (MQ=255) gCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTg > 6:180033/1‑130 (MQ=255) gCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTg < 5:180033/130‑1 (MQ=255) gCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTa < 6:171117/149‑1 (MQ=255) attACCTGGGCGCGTTAACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTATGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGATAGTGCGGTATTTTTTTATg > 2:204662/3‑149 (MQ=255) tGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGa > 6:36132/1‑148 (MQ=255) gcgcGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAg > 3:361631/1‑148 (MQ=255) gcgTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTAt < 3:156961/149‑1 (MQ=255) gcgTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTAt < 5:120476/149‑1 (MQ=255) ttCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCa < 6:31502/149‑1 (MQ=255) aCCGTGGGTGACCAGCTGCTGTGGGGCACCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTAGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCAttt < 1:197230/149‑1 (MQ=255) gTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTcgc < 3:157766/149‑1 (MQ=255) gACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCgg > 8:170349/1‑149 (MQ=255) gACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCgg < 3:210945/149‑1 (MQ=255) aCCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCgg < 3:284414/148‑1 (MQ=255) cAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGcc > 1:358188/1‑149 (MQ=255) ctgctgTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTaa < 1:120062/149‑1 (MQ=255) tgtgGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGc > 7:87266/1‑149 (MQ=255) tgGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGcc < 4:361631/148‑1 (MQ=255) tgGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGc < 2:358188/147‑1 (MQ=255) tgGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCg < 5:36132/149‑1 (MQ=255) ggggCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCg > 2:181036/1‑148 (MQ=255) cgccgcCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATaa < 4:136119/149‑1 (MQ=255) gccgcATGTTGCGGATTCTGCTGTATCGTTGATCGTTCAGGCTTCACCTGAAAAATACCTCACTGGTGACAGTTCGGTATTTTTTTATGCCTTAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTaa < 1:204662/149‑1 (MQ=255) ccgcATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGTCTAATCGCCGGATAATTCATGCCGCTGTTTAAt < 1:239148/149‑1 (MQ=255) gcATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATgg < 4:53791/149‑1 (MQ=255) gcATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATgg > 5:238283/1‑149 (MQ=255) cATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGc < 6:171708/149‑1 (MQ=255) gATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCt > 7:230100/1‑149 (MQ=255) ggAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGa > 5:13472/1‑147 (MQ=255) ttGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAg‑ccg > 8:87826/1‑149 (MQ=255) aTCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAg‑ccgtt < 1:181036/148‑1 (MQ=255) tCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGACGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAg‑ccgttgc > 5:254684/1‑149 (MQ=255) gTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAg‑ccgttgccg > 6:335497/1‑149 (MQ=255) gTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAg‑ccgttgcc < 8:87266/148‑1 (MQ=255) ttCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAg‑ccgttgccgt > 5:179756/1‑149 (MQ=255) ttCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAg‑ccgttgccgt > 5:83478/1‑149 (MQ=255) ccTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGATGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCAGTTGCGGttgctt > 2:281676/1‑149 (MQ=255) aaaaaTACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGttgctttt < 8:230100/147‑1 (MQ=255) aTACCGCACTGTCACCAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGttgcttttgcttt < 2:115379/148‑1 (MQ=255) aTACCGCACTGTCACCAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGttgcttttgcttt > 1:115379/1‑148 (MQ=255) aTACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCCGTTGCCGTTGCCGttgcttttgcttt < 1:4974/149‑1 (MQ=255) tACCGCACTGTCACCAGTGCGGTATTTTTTTATTCCTGAAAGTATGCATATGGGTCGCGGGCCTAATCGCCGGAAAATTCATGCCGCTGTTTAATGTCGAAATGTCTGCTCTGACAGAG‑AAGTTTCCGTTGCAGttgcttttgcttttg > 8:318543/1‑149 (MQ=255) gCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTc > 3:209812/1‑149 (MQ=255) cACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTc > 7:85459/1‑148 (MQ=255) tGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAg > 8:157354/1‑149 (MQ=255) gTGACAGTGCGGTATTTTTTTATGCCTGTAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGttgctt < 3:2093/130‑1 (MQ=255) | CGCAAGCTGAACATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCATGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAG‑CCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAG > NC_002947/2255827‑2256120 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |