Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,389,285 | A→G | 12.5% | H49R (CAC→CGC) | rlmKL → | 23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,389,285 | 0 | A | G | 12.5% | 144.9 / 10.8 | 56 | H49R (CAC→CGC) | rlmKL | 23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase |
Reads supporting (aligned to +/- strand): ref base A (28/21); new base G (3/4); total (31/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.88e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 |
GTCGCCCCGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGGTGTGCACGCGGTCGA > NC_002947/2389144‑2389432 | gTCGCCCCGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGCCGAGGTGTGCTCGCGCACCTCg > 7:31827/1‑149 (MQ=255) tCGCCCCGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCgg < 2:56629/149‑1 (MQ=255) cGCCCCGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGCCGAGGTGTGCTCGCGCACCTCgtc < 8:31827/149‑3 (MQ=255) cGCCCCGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGc > 7:63052/1‑149 (MQ=255) gCCCCGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGTGCTCGCGCACCTCgtc < 5:47995/148‑3 (MQ=255) gCCCCGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGTGCTCGCGCACCTCgtc < 7:320656/148‑3 (MQ=255) ccccGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCATGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCa > 2:307395/1‑149 (MQ=255) tcaAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCgcggcg > 8:267504/1‑149 (MQ=255) aaaTAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGgcgc < 4:67019/148‑1 (MQ=255) aaaTAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGcgcc > 4:79464/1‑149 (MQ=255) aaaTAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGcgcc > 8:45011/1‑149 (MQ=255) aTAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGcgccgc > 2:140331/1‑149 (MQ=255) cccAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGa > 6:116335/1‑148 (MQ=255) cAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACAt < 8:63052/149‑1 (MQ=255) cgcTGGAATAGTCATGTCGTACCGTTTCGAACTTTACCTCCCCTGTCCCAAAGGGCTTGACAGCCTGGTCGCCGATGAGGGCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCGATTCGCGGCGCCGCCGACATGGaa < 8:266426/148‑1 (MQ=255) aTACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTa > 2:39415/1‑149 (MQ=255) tCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGc > 1:51487/1‑149 (MQ=255) ggACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCtgtgt < 1:126214/148‑1 (MQ=255) gACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTgtgtgt < 7:267504/149‑1 (MQ=255) tttCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGt > 1:50979/1‑149 (MQ=255) aaCTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGt < 1:39415/149‑1 (MQ=255) tACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTgg < 5:248518/148‑1 (MQ=255) tACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTgg < 3:79464/148‑1 (MQ=255) ccTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGcc < 1:140331/148‑1 (MQ=255) cTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACt < 1:69326/114‑1 (MQ=255) cTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACt > 2:69326/1‑114 (MQ=255) cTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCaa > 1:126834/1‑149 (MQ=255) ccTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACcgc < 7:45011/149‑1 (MQ=255) ccTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACcgc < 2:51487/149‑1 (MQ=255) ccAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCt < 4:114936/107‑1 (MQ=255) ccAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCt < 8:137203/107‑1 (MQ=255) ccAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCt > 7:137203/1‑107 (MQ=255) ccAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCt > 3:114936/1‑107 (MQ=255) cAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACGTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGc < 5:188136/149‑1 (MQ=255) ggCCTTGACAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGTGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGt < 8:347073/149‑1 (MQ=255) gAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTc > 7:213955/1‑147 (MQ=255) aaGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAgc > 7:71918/1‑149 (MQ=255) tGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTtc > 1:373863/1‑149 (MQ=255) tCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTtctc > 4:8625/1‑148 (MQ=255) gCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGAt > 3:279766/1‑149 (MQ=255) gCCGAAGAGGCCAAGGGCCTCGGCCCTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGTCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGAt > 2:230512/1‑149 (MQ=255) gAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATgaa < 2:126834/149‑1 (MQ=255) ggCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACg > 2:258358/1‑149 (MQ=255) gggCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGAGCTTCTCGATGAAGAACGCcgac > 2:251266/1‑148 (MQ=255) cTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCGCGATGAAGATCGCCGACGACCt > 6:310550/1‑149 (MQ=255) ccTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTac > 3:331800/1‑148 (MQ=255) cTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTacga > 1:233408/1‑149 (MQ=255) gACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACgg > 2:189184/1‑149 (MQ=255) aCGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGgt < 2:50979/149‑1 (MQ=255) cGAGGTGTGCTCGCGCACCTCGTCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCtgtgt < 4:334667/67‑1 (MQ=25) cGAGGTGTGCTCGCGCACCTCGTCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCtgtgt > 3:334667/1‑67 (MQ=25) cGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGgtg > 4:277777/1‑149 (MQ=255) gAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGgtgt < 4:279766/149‑1 (MQ=255) aGGTGTGCTCGCGCACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGGtgtg > 5:104296/1‑149 (MQ=255) cgcgAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGTCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGGTGTGCAcgc < 1:230512/149‑1 (MQ=255) gcgAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGGTGTGCAcgcg > 3:62021/1‑149 (MQ=255) cacaCCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGGTGTGCACGCGGTCGa < 5:116335/149‑1 (MQ=255) | GTCGCCCCGTCAGTCAAATAGCCCAAGGCGCTGGAATACTCATGTCGGACCGTTTCGAACTTTACCTCACCTGTCCCAAAGGCCTTGAAAGCCTGCTCGCCGAAGAGGCCAAGGGCCTCGGCCTTGACGAGGTGCGCGAGCACACCTCGGCCATTCGCGGCGCCGCCGACATGGAAACTGCTTACCGCCTGTGTGTCTGGTCACGTCTGGCCAACCGCGTATTGCTGGTGCTCAAGCGCTTCTCGATGAAGAACGCCGACGACCTTTACGACGGTGTGCACGCGGTCGA > NC_002947/2389144‑2389432 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |