Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,455,263 | T→A | 7.7% | intergenic (‑145/‑23) | mfd ← / → gapB | transcription‑repair coupling factor/glyceraldehyde‑3‑phosphate dehydrogenase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,455,263 | 0 | T | A | 7.7% | 151.2 / 2.4 | 52 | intergenic (‑145/‑23) | mfd/gapB | transcription‑repair coupling factor/glyceraldehyde‑3‑phosphate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base T (22/26); new base A (2/2); total (24/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01 |
TGCACTCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGAAGCGATGATCCCGCTTATCGGTCAGCTCTACCGCAATAACAATGTGGTGAG > NC_002947/2455126‑2455410 | tGCACTCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCttttt > 2:332763/1‑149 (MQ=255) gCACTCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCTACATTATGACGccc > 1:219044/1‑142 (MQ=255) gCACTCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCTACATTATGACGccc < 2:219044/142‑1 (MQ=255) cACTCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCtttttt < 1:332763/148‑1 (MQ=255) cACTCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTc < 1:180500/149‑1 (MQ=255) tCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCTACATTATGACGccccaac < 4:197569/142‑4 (MQ=255) tCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCTACATTATGACGccccaac > 3:197569/1‑139 (MQ=255) tCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGt > 4:241377/1‑149 (MQ=255) gcAAGCGTTGCGGCATAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATTAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCt < 6:117404/145‑1 (MQ=255) ccAAGAGATGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGAGTCATAATGTAGCCCCTTTATTCt > 5:117404/1‑146 (MQ=255) cAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGt < 6:314397/147‑1 (MQ=255) aaGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTccc > 5:232708/1‑149 (MQ=255) aaGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTccc < 6:63198/149‑1 (MQ=255) gTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACa < 3:371500/149‑1 (MQ=255) gCGGCAACGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGACAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGGTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACAtgt < 2:222040/149‑1 (MQ=255) aaaGTGACCGATTGTACCGGTGACAGTGCCGGCTATCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAg > 1:99096/1‑149 (MQ=255) agagACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGt > 3:229404/1‑149 (MQ=255) cGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTAACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTTTCCCTACATGTGGAAGGTTCACGt > 7:266685/1‑149 (MQ=255) tACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCa < 1:301349/149‑1 (MQ=255) ccGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAg > 3:203399/1‑148 (MQ=255) tGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGAc > 6:336899/1‑147 (MQ=255) tGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCa < 3:241377/149‑1 (MQ=255) tCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCtt < 5:189131/147‑1 (MQ=255) aGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGcc < 6:356876/132‑1 (MQ=255) aGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGcc > 5:356876/1‑132 (MQ=255) gCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAg > 6:308565/1‑149 (MQ=255) cTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGt > 3:196384/1‑149 (MQ=255) tCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTg > 7:252644/1‑149 (MQ=255) aaaGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGAt < 4:196384/149‑1 (MQ=255) ggCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGAt < 6:232708/149‑1 (MQ=255) gCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATc < 4:170275/149‑1 (MQ=255) gCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATc > 3:170275/1‑149 (MQ=255) tGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTg < 2:99096/149‑1 (MQ=255) aaCACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGaa < 5:336899/149‑1 (MQ=255) cacTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTc > 6:276728/1‑97 (MQ=255) cacTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTc < 5:276728/97‑1 (MQ=255) acTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGcc > 4:345830/1‑149 (MQ=255) cGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGaa < 1:215293/149‑1 (MQ=255) cGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGaa < 5:308565/149‑1 (MQ=255) gACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGAAGCGATGATc < 4:229404/149‑1 (MQ=255) gCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGccc < 8:162540/127‑1 (MQ=255) cTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGAAGCGATGATCCCGCTTAt < 3:345830/149‑1 (MQ=255) tCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCg < 5:319969/115‑1 (MQ=255) tCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCg > 6:319969/1‑115 (MQ=255) aTTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGAAGCGATGATCCCGCTTATCgg > 6:61625/1‑149 (MQ=255) ggcGGTTCCGCGTTGGTGCTTCATAATGTAGCGCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCAGGACCAGTGTGTTGGTGAGTGGATTTATCGTGAAGCCCTGGCTGAAGCGATGATCCCGCTTATCGGTc < 8:266685/146‑1 (MQ=255) gcgTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGAAGCGATGATCCCGCTTATCGGTCAGCTCTACCg > 5:169224/1‑149 (MQ=255) gTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGccc > 4:113044/1‑70 (MQ=255) gTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGccc < 3:113044/70‑1 (MQ=255) aTAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGAAGCGATGATCCCGCTTATCGGTCAGCTCTACCGCAATAACAAtgtg < 8:252644/149‑1 (MQ=255) aTAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCAGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGAAGCGATGATCCCGCTTATCGGTCAGCTCTACCGCAATAACAAtgtg > 1:72176/1‑149 (MQ=255) gTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATAGATCGTGAAGCCCTGGCTGAAGCGATGATCCCTCTTATCTGTAAGCTCTACCGCAATAACAATGTGGTGAg > 3:205624/1‑149 (MQ=255) | TGCACTCCAAGCGTTGCGGCAAAGAGACCGATTGTACCGGTGACAGTGCCGGCTGTCAGGCTCGAAAGGGCATGAACACTGGCTTGCGTCACTGCGACAGGCACTCATTGCCGGTTCCGCGTTGGGGCGTCATAATGTAGCCCCTTTTTTCTGTCCCTACATGTGGAAGGTTCCCGTGACTCAGAAGCCCGACCAGTGTCTTGGTGAGTGGATTGATCGTGAAGCCCTGGCTGAAGCGATGATCCCGCTTATCGGTCAGCTCTACCGCAATAACAATGTGGTGAG > NC_002947/2455126‑2455410 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |