| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,590 | T→C | 20.5% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,590 | 0 | T | C | 20.5% | 219.4 / 52.5 | 112 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (41/48); new base C (14/9); total (55/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 114 total aligned reads displayed.
CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACT > NC_002947/197443‑197737 | ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGAtt < 6:334673/149‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTcc < 2:330574/148‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTc < 2:203082/147‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTc < 2:105144/147‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCa < 2:70088/149‑1 (MQ=37) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGa > 7:184807/1‑149 (MQ=37) gCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCg > 6:82763/1‑149 (MQ=37) cccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCgg < 1:312925/149‑1 (MQ=37) ccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCTTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGc < 6:110072/149‑1 (MQ=37) cGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGc > 3:73980/1‑148 (MQ=37) gTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCg > 5:85000/1‑148 (MQ=17) ggTCACCGAAGGCGGCTTGATCACCTACAGCTTTATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAAt < 8:261318/148‑1 (MQ=255) gTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGa > 4:320262/1‑149 (MQ=37) tCACCGAAGGCGGCGTTATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGAc < 5:370495/149‑1 (MQ=37) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTc > 1:267672/1‑149 (MQ=37) gAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTa < 2:19237/149‑1 (MQ=37) aGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACATCTaca < 4:366416/149‑1 (MQ=37) ggcggcGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTacaa < 8:184807/149‑1 (MQ=37) gcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACaacaac > 2:114539/1‑149 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATATCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 6:361561/148‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc > 4:279417/1‑149 (MQ=37) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAccg > 6:150797/1‑147 (MQ=25) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 7:272391/1‑148 (MQ=39) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCTGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGc < 2:219363/149‑1 (MQ=255) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAAt > 5:207087/1‑118 (MQ=39) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAAt < 6:207087/118‑1 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTc < 2:267672/149‑1 (MQ=39) tGAGCAATCCTGCCCAGACGCCGGTAACGGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 1:209317/1‑149 (MQ=21) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGCCCCCGGCGAATGACGTCTACAACAACGGTTCGACAGTCAGCGTCACCATc > 7:166013/1‑147 (MQ=21) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc < 3:61450/147‑1 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCATCACCATc < 3:279417/147‑1 (MQ=17) cAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTAAGCGTCACCATCgag > 2:308336/1‑148 (MQ=17) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGTGTCACCATCGAGAACg > 1:138763/1‑149 (MQ=17) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACg > 1:198244/1‑149 (MQ=17) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc > 7:7570/1‑148 (MQ=37) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCg < 5:292430/141‑1 (MQ=17) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAACGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATTACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGcc > 4:92761/1‑149 (MQ=255) gCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCcac > 6:31277/1‑149 (MQ=17) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca < 3:310618/147‑1 (MQ=17) ccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg > 5:223147/1‑149 (MQ=17) gACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 3:298916/149‑1 (MQ=255) gACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGAAGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 7:324018/149‑1 (MQ=11) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 4:76351/149‑1 (MQ=37) gCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCCGCGTCACCATCGAGAACGCCACAGGCGGt > 4:267055/1‑148 (MQ=11) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc < 5:275321/136‑1 (MQ=37) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc > 6:275321/1‑136 (MQ=37) gtgaCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt > 4:117061/4‑149 (MQ=255) gTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt < 1:114539/149‑1 (MQ=37) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 7:104237/149‑1 (MQ=14) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 5:31277/149‑1 (MQ=14) aCCGTGACCCTGTCCAACGGCCAAACGATTCCCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 3:105698/149‑1 (MQ=255) aCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 3:245711/149‑1 (MQ=255) aCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:209317/149‑1 (MQ=34) aCCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGCGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt < 2:249473/149‑1 (MQ=255) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACACCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTAGAGCAACt > 1:373061/1‑148 (MQ=17) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 8:66867/1‑149 (MQ=12) cTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 3:267055/149‑1 (MQ=12) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGCCCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCAACAACAACGGTTCGCCTGTCAGCGTGCCCATCCAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 6:297346/1‑149 (MQ=11) gttCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc < 8:272257/147‑1 (MQ=17) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg < 8:272391/148‑1 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 1:130231/1‑148 (MQ=32) aaCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACGTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCCCCATCGAGAACGCCCCAGGCGGGAATTTCGAGCCACGGACCCCGac > 8:322259/1‑148 (MQ=11) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 8:124774/1‑93 (MQ=31) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 7:124774/93‑1 (MQ=31) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 6:27189/149‑1 (MQ=32) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAccc < 1:149834/149‑1 (MQ=34) cAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAc > 6:157542/1‑149 (MQ=255) aaCGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAccc > 7:216667/1‑147 (MQ=255) gaTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcccc < 2:14602/146‑1 (MQ=12) gaTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcccc > 1:14602/2‑147 (MQ=12) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGc > 7:35793/1‑149 (MQ=37) ttACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTAAAACAACGGTTAGACTGTCAGCGTCACCATGGAGAACGCCACAGGCGGTAATTTCGAGCAAATGACCCCGAACCCGACCCCGGCt > 1:102656/1‑149 (MQ=11) aCCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGTTAATTGCGTGCAAATCACCCGCACCCCGAC‑CCGGcgta > 3:22572/1‑145 (MQ=11) ccGTTGAAGCCGTCAAGACCCAGGGCAGCGG‑CGATTTCCATACCCCGGCTAATGACTTCTCCAACACCGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAg < 2:373061/149‑1 (MQ=11) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCGACAGGCGGTAATTTCGAGCAACTGAccc < 1:212647/129‑1 (MQ=17) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAccc > 2:212647/1‑129 (MQ=32) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCa < 4:209385/148‑1 (MQ=37) cGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGa < 8:216667/149‑1 (MQ=12) ttGAAGCCGGCAAAACCCAGGGCAGCGTGCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGAc > 1:212294/1‑149 (MQ=11) ttGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCGGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGAc > 1:26996/1‑148 (MQ=255) ttGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGAc > 7:47541/1‑148 (MQ=12) aaGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCAc > 1:251810/1‑148 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGTCGAATGACGTCTACAACAACGGTTCGACTTTCAGCGTCACCATCGAGAACGCCACAGGCTGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGa < 1:19033/149‑1 (MQ=255) ggCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAc > 5:233166/1‑149 (MQ=38) gCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa < 6:292807/75‑1 (MQ=34) gCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaac > 1:227355/1‑147 (MQ=2) gCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaac > 6:353944/1‑147 (MQ=2) gCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaac < 7:66867/149‑3 (MQ=2) aaGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa < 8:272639/73‑1 (MQ=34) aCCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc > 1:275990/1‑111 (MQ=32) aCCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc < 2:275990/111‑1 (MQ=32) aCCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTc > 7:196215/1‑149 (MQ=39) ccAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg > 6:258152/1‑149 (MQ=39) ccAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg > 3:26115/1‑149 (MQ=39) cAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGt < 2:207206/149‑1 (MQ=39) ggCAGCGT‑CGATTTCCAGACCCCTGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGa < 5:88966/149‑1 (MQ=255) t‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCact > 4:29623/1‑149 (MQ=39) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGTCCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCactac < 4:73980/149‑1 (MQ=255) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCactac < 2:130231/149‑1 (MQ=39) ttttCCAGACCCCGGCGAATGACGTCTACAACAAGGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCATCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCactact < 5:297346/148‑1 (MQ=255) | CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACT > NC_002947/197443‑197737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |