| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,478,841 | C→A | 6.0% | intergenic (+94/+351) | PP_2172 → / ← PP_2173 | hypothetical protein/AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,478,841 | 0 | C | A | 6.0% | 249.1 / 3.9 | 78 | intergenic (+94/+351) | PP_2172/PP_2173 | hypothetical protein/AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (32/40); new base A (3/2); total (35/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.08e-01 | |||||||||||
TTCGAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGAC > NC_002947/2478696‑2478984 | ttCGAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGACCGCt > 2:84830/1‑149 (MQ=255) gAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGa < 1:18663/148‑1 (MQ=255) gAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAg < 8:280210/149‑1 (MQ=255) gCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTc > 5:138378/1‑149 (MQ=255) cTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCtt > 4:107801/1‑145 (MQ=255) cTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCtt < 3:107801/145‑1 (MQ=255) cTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCg > 5:20256/1‑148 (MQ=255) aGCAACGCTGTCGGTTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAg < 7:237886/148‑1 (MQ=255) aGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAgg < 4:123/149‑1 (MQ=255) aGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAgg > 7:100470/1‑149 (MQ=255) aGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAg < 5:96113/148‑1 (MQ=255) aaCGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGgtg > 5:349497/1‑149 (MQ=255) aaCGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGgtg > 8:228644/1‑149 (MQ=255) aaCGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGAGCTGAGCTTTCGCAGGgtg > 5:343981/1‑149 (MQ=255) aCGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGgtgt > 7:268864/1‑149 (MQ=255) cGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGtgtt < 1:109453/149‑1 (MQ=255) tCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAAAGCTCAGCGCTCGCAGGgtgtggggg < 2:38127/148‑6 (MQ=38) ggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGttttgttttg < 4:227772/149‑1 (MQ=255) gctcttctTCAAAAAATGAACGATGATTTGCCCGGATCCTTCCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCGGCGTTGGCGGTGCTAATTGTCCGGGTTACGCCCC‑ACAGCCTGCGAGGGGTGAGCTTTCGCAGGGTGttttgttttg < 6:81888/147‑1 (MQ=255) tcttctTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGga < 3:194311/149‑1 (MQ=255) tcAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATAGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGAGcat > 2:284632/1‑149 (MQ=255) aaaaaaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACcatc > 4:58512/1‑148 (MQ=255) aaaaaaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACcatc < 2:120911/148‑1 (MQ=255) aaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAc > 3:172653/1‑149 (MQ=255) tGATCGATGATTTGACCGCATCCATGCAGTACCTGATGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcga < 5:216988/149‑1 (MQ=255) aTCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgag < 3:11699/148‑1 (MQ=255) tCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGATCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagc < 1:84830/148‑1 (MQ=255) tCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGttttgttttg > 2:161625/1‑130 (MQ=255) gatgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagcga < 7:294008/148‑1 (MQ=255) gatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAggg < 1:285200/113‑1 (MQ=255) gatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAggg > 2:285200/1‑113 (MQ=255) atTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCa < 3:239645/148‑1 (MQ=255) tttGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGga < 4:38376/125‑1 (MQ=255) tttGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAg < 1:252126/148‑1 (MQ=255) tttGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGc > 7:341804/1‑149 (MQ=255) ccGCATCCATGCAGTACCGGCTGTAGCGTGCACCGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGt > 1:239068/1‑149 (MQ=255) gCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGc < 5:243198/149‑1 (MQ=255) cATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCg < 5:291462/149‑1 (MQ=255) aTCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCgg < 5:36268/149‑1 (MQ=255) aTCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCgg < 4:323303/149‑1 (MQ=255) cATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCCAACACCCTGCGAAAGCTCAGCGCTCGCAGGgt < 4:124348/101‑1 (MQ=37) cATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCCAACACCCTGCGAAAGCTCAGCGCTCGCAGGgt > 3:124348/1‑101 (MQ=37) ccGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCgg > 1:260871/1‑149 (MQ=255) ccGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCgg > 5:128742/1‑149 (MQ=255) tAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACcac < 3:58512/149‑1 (MQ=255) gCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACTAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACcaca < 8:100470/148‑1 (MQ=255) gCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACcaca < 8:341804/148‑1 (MQ=255) gCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAg < 4:172653/149‑1 (MQ=255) gTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCAc < 4:251770/119‑1 (MQ=255) gTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCAc > 3:251770/1‑119 (MQ=255) cA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGTGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTAc < 6:305588/148‑1 (MQ=255) cA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAgcg < 2:106826/60‑1 (MQ=255) gagaGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTcc > 5:22717/1‑149 (MQ=255) cTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCAt > 7:30369/1‑149 (MQ=255) cTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCAt > 7:36211/1‑149 (MQ=255) tCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATg > 7:281414/1‑149 (MQ=255) gTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCaa < 6:128742/149‑1 (MQ=255) tAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTCGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAg < 6:20256/149‑1 (MQ=255) ggCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGt < 2:260871/149‑1 (MQ=255) gTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGt < 8:281414/149‑1 (MQ=255) gCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTg > 2:263745/1‑149 (MQ=255) aTTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTc > 2:139658/1‑148 (MQ=255) ttGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTcc > 5:342823/1‑148 (MQ=255) caCGGGTGACCCCCC‑ACCCCCGGCGAGCGCTGAGCTTTCGCAGGGTGTATTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGAGCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGGACGTTGGTCCAAGc < 4:31578/148‑1 (MQ=255) aCGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCg > 8:354763/1‑149 (MQ=255) gggTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGgt < 7:228644/149‑1 (MQ=255) gggTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGgt < 7:273223/149‑1 (MQ=255) ttACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGtt > 4:368113/1‑149 (MQ=255) tACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGttt > 8:285614/1‑149 (MQ=255) aCCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCa < 4:76813/123‑1 (MQ=255) aCCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCa > 3:76813/1‑123 (MQ=255) aCCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGttt < 1:263745/148‑1 (MQ=255) cccccc‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCg < 8:268864/149‑1 (MQ=255) ccc‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGGGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc > 5:369394/1‑147 (MQ=255) cc‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc > 4:169576/1‑146 (MQ=255) acacCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaagaa < 8:278534/149‑1 (MQ=255) cacCCTGCGAAAGCTCAGCGCTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaagaag > 4:190510/1‑149 (MQ=255) cTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAgg > 5:148862/1‑146 (MQ=255) cGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGAc < 3:169576/148‑1 (MQ=255) gcgcTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGgt < 2:132268/126‑1 (MQ=255) gcgcTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGgt > 1:132268/1‑126 (MQ=255) | TTCGAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCA‑CGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCC‑ACACCCTGCGAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGAC > NC_002947/2478696‑2478984 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |