Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,623,202 | C→T | 11.1% | intergenic (+38/‑208) | PP_5517 → / → PP_2295 | hypothetical protein/antirestriction protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,623,202 | 0 | C | T | 11.1% | 118.0 / 5.0 | 45 | intergenic (+38/‑208) | PP_5517/PP_2295 | hypothetical protein/antirestriction protein |
Reads supporting (aligned to +/- strand): ref base C (24/16); new base T (3/2); total (27/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.62e-01 |
AGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATGGGGTGTCG > NC_002947/2623054‑2623341 | aGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATc < 5:19558/149‑1 (MQ=255) ggggATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGc < 6:383446/148‑1 (MQ=255) cGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCGATTGGGCCCcttga < 4:215923/148‑3 (MQ=255) cGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAA‑GGGCCCGATTGGGCCCcttgagg < 1:169846/149‑5 (MQ=255) gtgtGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATc < 8:282402/136‑1 (MQ=255) gtgtGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATc > 7:282402/1‑136 (MQ=255) tgtgGAGGTGTTCCAACAGAATGAGTACGCGCTCACCTTCCTTTCTCCGAGTGGTCGGGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTcgc < 4:65771/149‑1 (MQ=255) ccAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTc > 6:68631/1‑148 (MQ=255) cAACAGACTGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGGCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTc < 5:134781/134‑1 (MQ=255) cAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATAAGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGa > 8:160643/1‑149 (MQ=255) cAACAGAATGAGTACGCGGTAACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACAACTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATAAGCAATCACACCTCAAGGTGCCCAATCGGGACCTTTTTc > 6:134781/1‑134 (MQ=255) gTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAgg > 8:160154/1‑149 (MQ=255) ccttTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGc > 2:286262/1‑149 (MQ=255) cttTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGcc < 8:89205/149‑1 (MQ=255) tttCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACGTAAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGcc > 1:107635/1‑149 (MQ=255) tcCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACa < 7:160643/149‑1 (MQ=255) ccGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGa > 6:320528/1‑146 (MQ=255) gCCTTCTACACCTACACCAAGTTCGTGAGCAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCCTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGa < 5:5630/149‑1 (MQ=255) ccTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGaa < 1:286262/149‑1 (MQ=255) ttCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAgc > 4:75701/1‑149 (MQ=255) tCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGGCGAGTCTGGAG‑AATTCGCAGGGGCTACGCCCGACAGAAGCCGCGTAGAcgcg > 4:19949/1‑149 (MQ=255) cacctacaccAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAgcgc < 3:75701/146‑1 (MQ=255) ctacaccAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGga < 4:130476/100‑1 (MQ=255) ctacaccAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGga > 3:130476/1‑100 (MQ=255) ctacaccAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCaa > 8:213071/1‑148 (MQ=255) ctacaccAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACACAATCCGCGTAGAAGCGCGCCaa > 3:47136/1‑148 (MQ=255) accAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCGAATCGGGGGCTTTTTGGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTACGCCCGACTGATTCCGCGTAGGAGCGCGGCAAAAt > 6:188885/1‑147 (MQ=255) ccAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTAc < 5:68631/149‑1 (MQ=255) cAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTAc > 7:156196/1‑148 (MQ=255) aGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGaa < 7:160154/149‑1 (MQ=255) gTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGaaa < 7:213071/149‑1 (MQ=255) gCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCcgc < 5:3665/93‑1 (MQ=255) gCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCcgc > 6:3665/1‑93 (MQ=255) gCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCa < 2:107635/149‑1 (MQ=255) aTCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACt < 1:151816/148‑1 (MQ=255) aTCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACt > 2:151816/1‑148 (MQ=255) acCTCAAGGGGCCCAATCGGGCCGTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGGAGCGCGCCAAAATTACGAAAACACGTCATTTCCGCAAATGGTCTTAAATCACTGGCATg > 8:156620/1‑149 (MQ=255) acCTCAAGGGGCCCAATCGAGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGaaaa > 6:159997/1‑111 (MQ=255) acCTCAAGGGGCCCAATCGAGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGaaaa < 5:159997/111‑1 (MQ=255) gaaaaagggCCCGATTGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATggg > 7:170383/7‑149 (MQ=255) gaaaaagggCCCGATTGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATggg > 5:93125/7‑149 (MQ=255) tCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAGAAATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATggg > 1:279322/1‑149 (MQ=255) tCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATgggg > 7:213724/1‑149 (MQ=255) tCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATgggg > 3:58698/1‑149 (MQ=255) aaaagggCCCGATTGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATGGGgt > 1:162582/5‑149 (MQ=255) aGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTGGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCGACAAATGGAAAGAAGTGAGTTGCAGGGGgtgg > 8:53435/1‑148 (MQ=255) aGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATGGGgtgt > 8:278274/1‑149 (MQ=255) gggCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAGATAAATCACTTGCAGGGGGTGTCg > 6:18312/1‑149 (MQ=255) | AGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGACG‑CAAGTCATACGCAATCACACCTCAAGGGGCCCAATCGGGCCCTTTTTCGCGTCTGTACGTCGATTCTGGAG‑AATTCGCAGGGGCTAAGCCCGACAGAATCCGCGTAGAAGCGCGCCAAAATTACGAAAACACGTCATTTCCACAAATGGAAATAAATCACTTGCATGGGGTGTCG > NC_002947/2623054‑2623341 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |