Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 220,622 | G→A | 7.8% | intergenic (+79/‑49) | PP_0168 → / → PP_5431 | putative surface adhesion protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 220,622 | 0 | G | A | 7.8% | 140.9 / 2.9 | 52 | intergenic (+79/‑49) | PP_0168/PP_5431 | putative surface adhesion protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (23/24); new base A (2/2); total (25/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.57e-01 |
TAACCAGACGATCAACTCGTTGATCAGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAGTTCACCGAAATG > NC_002947/220474‑220766 | tAACCAGACGATCAACTCGTTGATCAGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTgcg > 6:335845/1‑149 (MQ=255) aCCAGACGATCAACTCGTTGATCAGCGGCGCCTTTCCTACCTTCATCATCCACAACATGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTgcgc < 8:76904/148‑1 (MQ=255) cAGACGATCAACTCGTTGATCAGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGcc > 8:116440/1‑149 (MQ=255) cAGACGATCAACTCGTTGATCAGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGATACCCGCCAACAGCGCATACACTGGCGCCGGGCCTGCGCGcc > 7:211261/1‑149 (MQ=255) aGACGATCAACTCGTTGATCAGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACGACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGccc > 3:320742/1‑149 (MQ=255) aCGATCAACTGTTTTATCAGGGGCGCCTACCCGACCATCATCCTCCACAACATGGACCGCTGACACACCCCCGGGGCCGCACAGGGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGccc < 2:312639/147‑1 (MQ=255) aaCTCGTTGATCAGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCt > 3:335261/1‑149 (MQ=255) cGTTCATCAGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGCCCACCGGGCCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGc < 2:31037/149‑1 (MQ=255) aTCAGCGGCGCCTATCCGACCAGCAGAATCCACAACAAGGACAGCTGCCAGACCACCGGGGCCGCACCGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTAtg < 8:278049/149‑1 (MQ=255) aGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCCGGCCTGCGCGCCCCGCGCTGTTTGGCGAtgcgt > 6:32437/1‑147 (MQ=255) ggcgCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACCACCGGGTCCTCACAGCGGCACCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACACTGGCGCCGGGCCTGCGCGCCCGGCGATCATTGCCTATGcttctg > 6:92331/1‑149 (MQ=255) cGACCATCATCATCCACAACATGGACTGCTGACAGACCACGGGGGCCGCAGTGGGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACcaaca < 6:156705/149‑1 (MQ=255) aCCTTCATCATCCACAACAAGGACCGCTTACAGACCCCCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAg < 4:314643/149‑1 (MQ=255) tcatcCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAaacaa > 4:151399/1‑149 (MQ=255) aaaccACAACATGCCCCGCTCACCGACCCCGGGGCCCGAACCGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAaacaac < 1:330342/146‑1 (MQ=255) atcCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAaacaac < 5:335845/148‑1 (MQ=255) atcCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACg < 5:130536/149‑1 (MQ=255) tcCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGc > 5:82702/1‑116 (MQ=255) tcCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGt > 7:330304/1‑149 (MQ=255) ccACAACAACCACCGCTCACCCCCCCCCGGGGCCGCACCGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTg < 5:32437/149‑1 (MQ=255) caaaacaaGTACTGATTACAGACAACGGGTGCAGCAGTGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACATCGCATACTCTGGCGCCGGGCCTGCTCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTg < 5:92331/145‑1 (MQ=255) acaacaAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCGGCGCGCCCGGCGATCTTTGCCTATGGTGCTGTCTACCACCCAGGAAACAACGTGAc > 8:148780/1‑149 (MQ=255) aacaaGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACcaacaa > 3:280039/1‑133 (MQ=255) acaaGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAg < 5:374557/149‑1 (MQ=255) caaGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAgg > 5:98185/1‑149 (MQ=255) aGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCg > 3:158500/1‑149 (MQ=255) cTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGcc < 7:116440/149‑1 (MQ=255) tGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGc > 2:2421/1‑147 (MQ=255) aGACCCCCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGtt < 2:78870/149‑1 (MQ=255) gACCACCGGTGCCGAACAGCGGCGCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACTACGTGTCGAGGGACATCGCCATGTTc < 8:211261/149‑1 (MQ=255) ccaccGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTa > 5:78663/1‑149 (MQ=255) caccGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTAc < 1:81268/149‑1 (MQ=255) gCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCCGCGATCTTTGCCTATGCTGCAGTCTACCAACAAGGAAACAACGTGACCAGGGTCATCGCCATGTTCTACGTgcaaacc > 3:170911/1‑145 (MQ=255) acaGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTgcaacgcaac > 3:246319/1‑149 (MQ=255) ccGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTTCAAACAAGGAAACAACGTGACGAGGGACATCGCCATGTtataa > 8:89438/1‑127 (MQ=255) ccGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGccgccgtc < 6:98185/149‑3 (MQ=255) ccGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCAGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTAc < 7:89438/128‑1 (MQ=255) tttCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTtgc > 7:210000/1‑149 (MQ=255) ccTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTtgctg < 1:2421/148‑1 (MQ=255) cTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCgg < 4:246319/147‑1 (MQ=255) cTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGt < 4:158500/149‑1 (MQ=255) ccGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGaa < 6:78663/149‑1 (MQ=255) cGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGGGGCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAag < 4:170911/149‑1 (MQ=255) cgcATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCgg < 4:332993/133‑1 (MQ=255) cgcATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCgg > 3:332993/1‑133 (MQ=255) cATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGttt < 3:151399/149‑1 (MQ=255) caaagatcgcCGGGCGCGCAGGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGcc < 6:318279/133‑1 (MQ=255) caaagatcgcCGGGCGCGCAGGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGcc > 5:318279/8‑140 (MQ=255) ctGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAg > 4:293077/1‑149 (MQ=255) atcgcCGGGCGCGCAGGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAg < 4:189039/145‑1 (MQ=255) atcgcCGGGCGCGCAGGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAg > 3:189039/3‑147 (MQ=255) gcgcCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAg < 7:340380/146‑1 (MQ=255) gcCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAGTTCAc > 5:318278/1‑149 (MQ=255) cTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAGTTCACCGAAATg > 8:104744/1‑149 (MQ=255) gcgcCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAGtt < 3:25042/135‑1 (MQ=255) gcgcCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAGtt > 4:25042/1‑135 (MQ=255) | TAACCAGACGATCAACTCGTTGATCAGCGGCGCCGATCCGACCATCATCATCCACAACAAGGACAGCTGACAGACCACCGGGGCCGCACAGCGGCCCCGGCTCTTTCCTGCTACCCGCCAACAGCGCATACTCTGGCGCCGGGCCTGCGCGCCCGGCGATCTTTGCCTATGCTGCTGTCTACCAACAAGGAAACAACGTGACGAGGGACATCGCCATGTTCTACGTGCAACGCAACGCCGCCGGCCAGTTGCTGCGGGTGGAAGCAGCCGCGTTTGATCAGTTCACCGAAATG > NC_002947/220474‑220766 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |