Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,822,334 | G→A | 9.5% | intergenic (+19/‑94) | PP_2475 → / → curA | TetR family transcriptional regulator/NADPH‑dependent curcumin/dihydrocurcumin reductase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,822,334 | 0 | G | A | 9.5% | 108.6 / 3.1 | 42 | intergenic (+19/‑94) | PP_2475/curA | TetR family transcriptional regulator/NADPH‑dependent curcumin/dihydrocurcumin reductase |
Reads supporting (aligned to +/- strand): ref base G (21/17); new base A (2/2); total (23/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 |
CCACACTGCGACGGCCCTTTACCAGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGCGTCGTTCTGGCCTCACGTC > NC_002947/2822186‑2822476 | ccACACTGCGACGGCCCTTTACCAGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTCACAACATCTGAAGGCGAGGTTGCCCACCTg > 1:126696/1‑149 (MQ=255) ggCCCTTTACCAGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCAtt > 4:15404/1‑149 (MQ=255) ccTTTACCAGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCAttttt < 6:122552/149‑1 (MQ=255) ccTTTACCAGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCAACAGGTGGGCaa > 5:347212/1‑144 (MQ=255) ccTTTACCAGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCAACAGGTGGGCaa < 6:347212/145‑2 (MQ=255) aCCAGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACAACTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCAc > 1:312812/1‑149 (MQ=255) aGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGa < 2:312812/149‑1 (MQ=255) gTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCTTTCTGACCTCTGACATCATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGAc > 3:303031/1‑149 (MQ=255) gCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAAc > 2:145700/1‑147 (MQ=255) gCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTATGACCTCTGACAACATCTGATGGCGAGGTTGCCCACCTGTTGGTTGGCATTTTTTTCACttccaaac > 2:174950/1‑140 (MQ=255) tCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCAACAGGTGGGCaac < 4:12735/129‑3 (MQ=255) tCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCAACAGGTGGGCaac > 3:12735/1‑127 (MQ=255) aGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGt < 1:182620/149‑1 (MQ=255) gTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTa > 8:7235/1‑138 (MQ=255) gTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTa < 7:7235/138‑1 (MQ=255) ctgAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTaa < 2:105217/147‑1 (MQ=255) ctgAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTa < 7:87508/146‑1 (MQ=255) gAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCg > 1:206520/1‑149 (MQ=255) gAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCg > 1:212263/1‑149 (MQ=255) aGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCgg < 2:212263/149‑1 (MQ=255) aGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCgg < 2:206520/149‑1 (MQ=255) gCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGAt > 3:14264/1‑149 (MQ=255) cacCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATc > 8:260220/1‑146 (MQ=255) tAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGACGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAg > 2:128032/1‑149 (MQ=255) gCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTc < 3:15404/149‑1 (MQ=255) ccGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCa < 4:27469/149‑1 (MQ=255) aaaCGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAAccc > 1:115303/1‑148 (MQ=255) gCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTg < 1:145700/148‑1 (MQ=255) aCTCAGACCATTCTGACCTCTGACAACATCTAATGGCGCGGTTGCCAACCTGTTGGTGGGCAATTTTTTCACTGACCAACTATTCGAATGGTCTAATTCGGGTGATCGAGAAAAGCCCAACTTCAGCAACCCCACGAGTTTGCACATGc > 5:250542/1‑149 (MQ=255) aGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGcccc > 3:308174/1‑148 (MQ=255) aGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATAGAGACAAGCCAAACTTCAGCAACCCCAGCAGTTTGCACATGcccc > 4:190682/1‑148 (MQ=255) gACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCaa > 5:203780/1‑149 (MQ=255) ctGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCaaa > 7:68095/1‑140 (MQ=255) ctGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCaaa < 8:68095/140‑1 (MQ=255) gATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGcgtcgt > 8:77740/1‑149 (MQ=255) gcgcGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGGCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGCGTCGTTCTg < 1:174950/149‑1 (MQ=255) gcgGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGCGTCGTTCTGGc < 7:260220/149‑1 (MQ=255) gcgGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGCGTCGTTCTGGc < 1:128032/149‑1 (MQ=255) aaaaatGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGCGTCGTTCTGGc > 3:177412/6‑149 (MQ=255) ttGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCACGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGCGTCGTTCTGTCCTCa < 6:250542/149‑1 (MQ=255) ccACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGgcgc < 5:93185/130‑1 (MQ=255) ccACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGgcgc > 6:93185/1‑130 (MQ=255) ccACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGCGTCGTTCTGGCCTCACGTc > 4:142239/1‑149 (MQ=255) | CCACACTGCGACGGCCCTTTACCAGTTGTGGCTCGGTGCGAGTCTGCTGAGCAAGCTACACCGTAATAGTCGGCCGCTGGAAAACGCCATGGCCACAACTCAGACCATTCTGACCTCTGACAACATCTGATGGCGCGGTTGCCCACCTGTTGGTGGGCATTTTTTTCACTGACCAACTAGTCGACTGGTCTAATTCGGGTGATCGAGACAAGCCCAACTTCAGCAACCCCAGGAGTTTGCACATGCCCCAATCAAAGCTAATCAATCGGCGCGTCGTTCTGGCCTCACGTC > NC_002947/2822186‑2822476 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |