Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,897,724 | T→A | 13.9% | intergenic (+98/‑52) | PP_2551 → / → PP_2552 | LysR family transcriptional regulator/DOPA decarboxylase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,897,724 | 0 | T | A | 13.9% | 106.7 / 8.0 | 43 | intergenic (+98/‑52) | PP_2551/PP_2552 | LysR family transcriptional regulator/DOPA decarboxylase |
Reads supporting (aligned to +/- strand): ref base T (18/19); new base A (4/2); total (22/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.64e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 |
GCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGTCATGGCC > NC_002947/2897578‑2897868 | gcgcCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTa > 4:276854/1‑149 (MQ=255) ggTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGca > 8:108731/1‑149 (MQ=255) cAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAgg < 2:97311/149‑1 (MQ=255) gcgggcATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAAt < 2:133605/149‑1 (MQ=255) cATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGAt > 6:51315/1‑148 (MQ=255) ttCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAg > 4:63002/1‑149 (MQ=255) gCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGga < 5:315347/148‑1 (MQ=255) cATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGagag > 6:325526/1‑149 (MQ=255) tAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCt < 1:260560/149‑1 (MQ=255) tAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTCGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCt < 3:195661/149‑1 (MQ=255) cagcTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGc < 7:108731/149‑1 (MQ=255) aGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAAc < 2:204290/149‑1 (MQ=255) aGCGAGGTTATTCGGCTGGGGATAGGGGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGaa < 8:46833/148‑1 (MQ=255) gTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTcc < 3:63002/149‑1 (MQ=255) gTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTAAACCcgc < 2:266074/86‑1 (MQ=255) gTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGAATGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTAAACCcgc > 1:266074/1‑86 (MQ=255) aTTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGc < 8:112873/148‑1 (MQ=255) aTTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCAGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCGAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGACCAATTCCGcc > 8:105504/1‑149 (MQ=255) tCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAg > 6:42187/1‑149 (MQ=255) gCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTAc > 3:43334/1‑149 (MQ=255) aGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCaa > 6:90171/1‑149 (MQ=255) ggTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAAATCCGCCAGTACGG‑CCACCAAc < 4:43334/149‑1 (MQ=255) gTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACt > 5:343701/1‑149 (MQ=255) cTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCACCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATc < 5:51315/149‑1 (MQ=255) gACTGGGGCAGTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGAc < 2:287155/149‑1 (MQ=255) cTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCt > 4:328785/1‑149 (MQ=255) gggCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGAt > 2:7896/1‑149 (MQ=255) gATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCTCAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTAcc < 4:339209/148‑1 (MQ=255) gATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGGCCCACCAACTGATCGACCTGATTGCCGACTa < 1:22162/147‑1 (MQ=255) gATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTa > 2:22162/1‑146 (MQ=255) tgCGGCTTCTTCGCGGCTGTAGGCGCAGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGa > 5:159277/1‑149 (MQ=255) ttcttcGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTgg > 1:147856/1‑149 (MQ=255) ttcGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCTCCAACTGATCGACCTCATTTCCGACTACCGCCAGACCGTGGGc > 7:184623/1‑148 (MQ=255) tAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCg < 5:325526/147‑1 (MQ=255) tAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCg < 5:90171/147‑1 (MQ=255) tttcgcgGGTAAACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAg > 1:354743/4‑128 (MQ=255) tttcgcgGGTAAACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAg < 2:354743/125‑1 (MQ=255) tttcgcgGGTAAACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGt > 3:78663/4‑148 (MQ=255) tttcgcgGGTAAACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGt > 2:160208/4‑148 (MQ=255) ggCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTTGGCGAACGCCCGGTc < 6:343701/148‑1 (MQ=255) gcgGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGTCATgg < 3:328785/149‑1 (MQ=255) gcgGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCCTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGTCATgg > 3:258534/1‑149 (MQ=255) gTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGCCTCCCGCCAGACCGTGGGCGAACGCCCGGTCATGGcc > 4:54769/1‑147 (MQ=255) | GCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGCGGCTTCTTCGCGGCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCAGCACAGGCAATGGATAACCCCCAGGAGAGCTAGCGTGACCCCCGAACAATTCCGCCAGTACGG‑CCACCAACTGATCGACCTGATTGCCGACTACCGCCAGACCGTGGGCGAACGCCCGGTCATGGCC > NC_002947/2897578‑2897868 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |