Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,021,985 | G→C | 7.7% | E841D (GAG→GAC) ‡ | PP_2638 → | cellulose synthase operon protein C |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,021,985 | 0 | G | C | 7.7% | 160.5 / 4.1 | 52 | E841D (GAG→GAC) ‡ | PP_2638 | cellulose synthase operon protein C |
Reads supporting (aligned to +/- strand): ref base G (24/24); new base C (2/2); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.54e-01 |
TACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCGTTGGGTTGGCAGGGCAGCCGCT > NC_002947/3021842‑3022133 | tACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGaa > 4:86036/1‑149 (MQ=255) gCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGGCTCGAACGac < 2:255718/149‑2 (MQ=255) cTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGAt > 3:344744/1‑148 (MQ=255) gcgcGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGGCTCGAACGaccc < 8:167363/147‑4 (MQ=255) cgcgAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCATTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAgg < 7:355060/148‑1 (MQ=255) gcgAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAggg > 3:127818/1‑148 (MQ=255) gcgAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATCCGGGGTCGTTCGAGCCGAACGATCAgg > 8:355060/1‑147 (MQ=255) gAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGCTCAGGGAAg > 8:254679/1‑149 (MQ=255) aTGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTac < 3:367185/149‑1 (MQ=255) aCGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACAcc < 6:332788/149‑1 (MQ=255) cccGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCTAGCCGAACGATCAGGGAAGCTACACCCCCGACtt < 5:27373/149‑1 (MQ=255) ccGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGTCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTc < 2:120881/149‑1 (MQ=255) cGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCg < 4:344744/149‑1 (MQ=255) cGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCg < 4:127818/149‑1 (MQ=255) gAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGc > 2:79093/1‑147 (MQ=255) gAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCa < 4:360823/149‑1 (MQ=255) aaCTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAg > 8:241865/1‑149 (MQ=255) aGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTttgt > 7:337806/1‑149 (MQ=255) gTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTttgtt < 5:251560/149‑1 (MQ=255) tACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCt < 4:243031/137‑1 (MQ=255) tACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCt > 3:243031/1‑137 (MQ=255) tACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTttgtt < 3:123850/148‑1 (MQ=255) cAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCa < 3:86036/149‑1 (MQ=255) gACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCg > 5:303431/1‑149 (MQ=255) ccTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCt < 6:303431/149‑1 (MQ=255) ttgCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACgg < 4:177474/149‑1 (MQ=255) aTGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCt > 6:288456/1‑96 (MQ=255) aTGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCt < 5:288456/96‑1 (MQ=255) tGTCGACACACCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCAGACCGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCGAGTTTGTTGGCCAGACCGCGGCCGGGaaaa > 6:216622/1‑149 (MQ=255) acCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGcc > 6:72432/1‑149 (MQ=255) cccTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCcg > 1:201402/1‑149 (MQ=255) ggCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGt < 7:241865/147‑1 (MQ=255) cAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCAc > 7:159942/1‑149 (MQ=255) aggaggGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACg > 5:228952/1‑149 (MQ=255) aggGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACgggg < 8:337806/149‑1 (MQ=255) cgAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCaaa < 1:79093/149‑1 (MQ=255) gagCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAg > 7:2929/1‑149 (MQ=255) gagCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAg > 5:269151/1‑149 (MQ=255) cATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGt > 8:171337/1‑149 (MQ=255) ttGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTg > 3:51648/1‑149 (MQ=255) gCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACggg > 5:214081/1‑115 (MQ=255) gCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACggg < 6:214081/115‑1 (MQ=255) tGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCgttg < 4:51648/149‑1 (MQ=255) gCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCgttgggttg > 3:357796/1‑149 (MQ=255) cGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCgttgggttgg < 1:262619/149‑1 (MQ=255) ggggTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCgttgggttgg > 3:308798/1‑148 (MQ=255) ggggTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCGTTGGGTTggc < 2:321845/149‑1 (MQ=255) ctgatCGTTCGGCTCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCgttgggttgg > 2:71972/5‑148 (MQ=255) tgatCGTTCGGCTCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCgttgggttgg > 1:252604/4‑147 (MQ=255) gggTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCGTTGGGTTggca < 6:269151/149‑1 (MQ=255) tCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCGTTGGGTTggcaggg < 7:171337/149‑1 (MQ=255) gTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCGTTGGGTTggcaggg > 4:286909/1‑147 (MQ=255) gCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCGTTGGGTTGGCAGGGCAGCCGCt > 8:127865/1‑149 (MQ=255) | TACGGCTGGCGCGAGGATGACGGTACGCCCGGTACTTCGGAACTGAGTACCCAGTCGACCTTGTTGCATGTCGACACCCCTTGGCAGGAGGGCACCGCGTTTGCGCGAGTAGAGCGCATTGGCATGGATGCGGGGTCGTTCGAGCCGAACGATCAGGGAAGCTACACCCCCGACTTCGGCAGCTGCCAGTTTGTTGGCCAGACCGCTGACGGCAAAACACTGCCCGCGTGCACGGGGGGATCGCAGACTGCAAACGGCAGCCTGTTGGCGTTGGGTTGGCAGGGCAGCCGCT > NC_002947/3021842‑3022133 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |