Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,177,810 | C→T | 12.3% | intergenic (‑48/+116) | PP_2788 ← / ← PP_2789 | MerR family transcriptional regulator/oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,177,810 | 0 | C | T | 12.3% | 123.3 / 6.6 | 49 | intergenic (‑48/+116) | PP_2788/PP_2789 | MerR family transcriptional regulator/oxidoreductase |
Reads supporting (aligned to +/- strand): ref base C (24/18); new base T (3/3); total (28/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTGCCTTCGCGTTGCGGTGGGGGTAGCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTGGCGACTGCCTGGACTTGTTT > NC_002947/3177662‑3177955 | ttGCCTTCGCGTTGCGGTGGGGGTAGCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTc > 4:13586/1‑149 (MQ=255) gCGGTGGGGGTAGCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGgcgcgc < 3:13586/148‑1 (MQ=255) ggTGGGGGTAGCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGCGCCTGTACGAGCACGCGAc < 1:75848/149‑1 (MQ=255) gTGGGGGTAGCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACa > 4:152967/1‑149 (MQ=255) ggggTAGCAGGCCGATTTCTTCGTACTGGCGGATGCTTTTGACGGTGGTGCCCGCCAGCTGGGCGGCTTTGCCGATGGACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACAttt < 1:141060/149‑1 (MQ=255) gggTAGCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACAtttt > 1:79519/1‑149 (MQ=255) ggTAGCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACAttttt < 4:348644/149‑1 (MQ=255) gCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGca > 4:370855/1‑148 (MQ=255) agaccGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGCGCCTGTACGAGCACGCGACAtc > 4:133641/4‑139 (MQ=255) agaccGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGCGCCTGTACGAGCACGCGACAtc < 3:139236/137‑2 (MQ=255) agaccGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGCGCCTGTACGAGCACGCGACAtc < 3:133641/137‑2 (MQ=255) agaccGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGCGCCTGTACGAGCACGCGACAtc > 4:139236/4‑139 (MQ=255) cGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCAGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGt > 8:123337/1‑149 (MQ=255) aaTGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTggg > 4:295002/1‑147 (MQ=255) aaTGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATCTTTGCACAAGCGTCAGGGGTggg > 2:263258/1‑147 (MQ=255) aTGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGaa < 3:152967/148‑1 (MQ=255) aTGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGAGAAAAGATGTCCCGTTCTCGTACAGGCGCGAGACTTTTTTGCAAAAGCGTCAGGGGTGGGAAg > 4:247239/1‑149 (MQ=255) ggATGCTTTTGACTGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAg < 6:328320/149‑1 (MQ=255) aTGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCt > 6:280450/1‑149 (MQ=255) ttttGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGaa > 7:327463/1‑148 (MQ=255) ttGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGaaaa < 2:79519/148‑1 (MQ=255) tGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAg < 4:57815/148‑1 (MQ=255) cGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCTATTAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGt < 3:309864/149‑1 (MQ=255) ggtggtGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTTACGCATCAGAAGCGAAAAGATGTAGCGTGCTCGTACAGGCGCGCGACAATTATGCACAACCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGt > 7:170196/1‑148 (MQ=255) tgCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAg > 3:33090/1‑148 (MQ=255) cccGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCAc > 2:109747/1‑149 (MQ=255) cAGCTGGGCGGCTTTGACGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCTTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGTGAAGCCAAGCTGAAAAGGCGTCACAGCAcggcgg < 3:247239/149‑1 (MQ=255) gCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGcggct < 3:295002/149‑1 (MQ=255) gggCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTAGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACCTCACGGcggctcgg > 8:171613/1‑149 (MQ=255) gcagcTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGcggctcggct < 7:123337/146‑1 (MQ=255) tGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATCTTTGCACAAGCGTCAGGGGTGGCAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCa < 1:263258/147‑1 (MQ=255) gCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGACCGGCGGCTCGGCTGGGCAgcg > 3:225236/1‑149 (MQ=255) tGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACgg > 6:44811/1‑149 (MQ=255) gAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGc > 1:360532/1‑149 (MQ=255) aaaaTCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGcc > 8:172548/1‑149 (MQ=255) tCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGAc < 4:33090/149‑1 (MQ=255) cTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCgg > 4:95932/1‑149 (MQ=255) cTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCgg < 1:117554/149‑1 (MQ=255) ttttttGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCg > 1:104680/1‑143 (MQ=255) ttttttGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCg < 2:104680/143‑1 (MQ=255) ttttGACGCATGAGAAGCGAAAAGATGTCGCGTGGTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCggg < 8:159947/147‑1 (MQ=255) gCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCAGACCGGGGCCGATccg > 6:261455/1‑147 (MQ=255) gCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTg < 8:195241/146‑1 (MQ=255) gCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTg > 7:195241/1‑146 (MQ=255) gCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTCTTAAGGCGTCACAGCAAGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTGGc > 1:117135/1‑148 (MQ=255) aaaaGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTGGCGACt > 5:361382/1‑149 (MQ=255) gTCGCGCGCCTGTACGAGCACGCGACATCTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTGGCGACTGCCTGGa > 8:182917/1‑149 (MQ=255) tCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTGGCGACTGCCTGGAc > 4:265026/1‑149 (MQ=255) tCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTGGCGACTGCCTGGAc < 3:265026/149‑1 (MQ=255) tCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTGGCGACTGCCTGGACTTGttt > 3:283979/1‑147 (MQ=255) | TTGCCTTCGCGTTGCGGTGGGGGTAGCAGGCCGATTTCTTCGTAATGGCGGATGCTTTTGACGGTGGTGCCCGACAGCTGGGCGGCTTTGCCGATGTACATGAAAATCCCTTTTTTGACGCATCAGAAGCGAAAAGATGTCGCGTGCTCGTACAGGCGCGCGACATTTTTGCACAAGCGTCAGGGGTGGGAAGCCAAGCTGAAAAGGCGTCACAGCACGGCGGCTCGGCTGGGCAGCGCAGGGGCACGGCCCGACCGGGGCCGATCAGCGGCTGGCGACTGCCTGGACTTGTTT > NC_002947/3177662‑3177955 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |