Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,352,174 | A→G | 11.1% | intergenic (+64/+78) | PP_2947 → / ← PP_2948 | transcriptional regulator MvaT/GntR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,352,174 | 0 | A | G | 11.1% | 117.9 / 5.6 | 45 | intergenic (+64/+78) | PP_2947/PP_2948 | transcriptional regulator MvaT/GntR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base A (21/19); new base G (2/3); total (23/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.65e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 |
CAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGA > NC_002947/3352032‑3352322 | cAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCg > 6:202659/1‑149 (MQ=255) tGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACGCTGTCGcttcct < 6:197047/149‑1 (MQ=255) tGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACGCTGTCGcttcct < 6:202090/149‑1 (MQ=255) tGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGcctcct < 2:53353/149‑1 (MQ=255) gCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTGTTTTTCGAGGAAGCGACAGCGTCGCctcctc < 1:38266/148‑1 (MQ=255) acaAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAg > 2:358170/1‑149 (MQ=255) aTGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGGGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGGCGCCTCCTCGAAACAGGGCGTTCATCgtgggt > 6:243558/1‑149 (MQ=255) cccAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGaa > 5:327255/1‑149 (MQ=255) cccAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGaa > 1:278280/1‑149 (MQ=255) ccAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAAt < 5:348451/149‑1 (MQ=255) gTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAg < 2:233445/149‑1 (MQ=255) tACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGc < 1:192762/149‑1 (MQ=255) tACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGc < 4:107370/149‑1 (MQ=255) agaagTGGAATCCTGGGTGTCCTGATTCGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGtt < 7:354983/148‑1 (MQ=255) agTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATCGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAAc < 7:212468/149‑1 (MQ=255) gTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACa < 1:358170/149‑1 (MQ=255) ggAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAg > 6:366664/1‑148 (MQ=255) gcTGGGTGTCCTGATTTGTGCTGATCTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGTCGGAATGAGATGACGTGGTTAAACAGGAAGtt < 3:49477/148‑1 (MQ=255) tCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCAc < 6:327255/148‑1 (MQ=255) tGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAg > 3:138306/1‑149 (MQ=255) aTTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACGGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAgcg > 5:217330/1‑149 (MQ=255) cTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAgt < 5:88580/148‑1 (MQ=255) cTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCACTCATCATGGCGTTCATCGTGGGTGGGCGGATAGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGGGCTCAgag > 4:221848/1‑147 (MQ=255) tGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAgtgt > 1:155584/1‑149 (MQ=255) gCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGttt < 1:190896/148‑1 (MQ=255) aTTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCa > 7:294607/1‑121 (MQ=255) aTTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCa < 8:294607/121‑1 (MQ=255) gcTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGt > 6:177393/1‑148 (MQ=255) aTCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAAt > 2:17966/1‑149 (MQ=255) tCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAAtt > 8:202483/1‑149 (MQ=255) cTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAAttt > 7:199174/1‑149 (MQ=255) tGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGttt < 1:212730/131‑1 (MQ=255) tGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGttt > 2:212730/1‑131 (MQ=255) tGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTCGGCGGAATGAGCTGACGTTGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAAAACTTCGTAAAtttt > 8:2556/1‑149 (MQ=255) aCGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCa > 3:42973/1‑149 (MQ=255) cTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAg < 5:202659/149‑1 (MQ=255) cTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAg > 7:46887/1‑149 (MQ=255) ttGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGc > 4:34700/1‑149 (MQ=255) ccctgtttCGAGGAGGCGACGCTGTCGCTTCCTCTAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGa > 5:317657/6‑149 (MQ=38) tCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGAt > 3:364926/1‑149 (MQ=255) tttCGAGGAAGCGACGGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTgg < 6:217330/148‑1 (MQ=255) tttCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCTGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTgg < 4:56249/148‑1 (MQ=255) tCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGc < 5:366664/148‑1 (MQ=255) gCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGaa < 5:177393/149‑1 (MQ=255) gCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGa > 1:144472/1‑148 (MQ=255) aGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACgga < 2:278280/149‑1 (MQ=255) aGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACgga < 5:243558/149‑1 (MQ=255) | CAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGA > NC_002947/3352032‑3352322 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |