| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 284,587 | T→A | 10.3% | intergenic (+34/+29) | betT‑II → / ← atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 284,587 | 0 | T | A | 10.3% | 203.6 / 10.5 | 81 | intergenic (+34/+29) | betT‑II/atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| Reads supporting (aligned to +/- strand): ref base T (35/37); new base A (3/5); total (38/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.70e-01 | |||||||||||
AGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATT > NC_002947/284443‑284729 | aGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGccc < 1:205271/149‑1 (MQ=255)aGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGc < 5:232444/147‑1 (MQ=255)aGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGc < 4:255574/147‑1 (MQ=255) cGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCcgc < 4:184278/149‑1 (MQ=255) gAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCcgc > 1:224179/1‑148 (MQ=255) aaGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCtt < 6:382222/141‑1 (MQ=255) aaGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCtt > 5:382222/1‑141 (MQ=255) gacgCCATAACTATGACCTGGTGGGCTACAGCAAGCAGCAGATCATCCACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAaga < 4:223024/146‑1 (MQ=255) gCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCACCGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAaga < 6:332403/149‑1 (MQ=255) cAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAagag < 1:187648/149‑1 (MQ=255) gcaataaCTATGCCCTGGTGGGCTACACAATGGACATTACAATCAACCACATCCTCCACCAGACCGAGCGGCACATCAAGTACCTGCACCTGGT‑CCGCTTACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGc < 6:58201/144‑1 (MQ=255) ccAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCACGCGAAGAGGc > 7:145333/1‑148 (MQ=255) cAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCcgc < 5:201666/139‑1 (MQ=255) cAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCcgc > 6:201666/1‑139 (MQ=255) cAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGc > 4:71013/1‑147 (MQ=255) aaCTATGTCCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCCCATGCAGTACCTGCACCTGGTCCCGCTGACCAAGCTCTCCTGTCCTGGCCGCTTCGCGGGCTTGCCCGCGAAGAGGCCa < 1:289494/147‑1 (MQ=255) aaCTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCtt < 6:130396/130‑1 (MQ=255) aaCTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCtt > 5:130396/1‑130 (MQ=255) aCTATGACCTGGTGGGCTACAGCAAGGAGCAGAGCATCACCGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGCAAGCCCGCGAAGAGGCCA‑ggaca < 6:207935/149‑5 (MQ=38) tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAgg > 3:46317/1‑149 (MQ=255) tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAgg > 5:161414/1‑149 (MQ=255) tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAag > 3:319446/1‑137 (MQ=255) tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAag < 4:319446/137‑1 (MQ=255) gACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa < 3:59752/133‑1 (MQ=255) gACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa > 4:59752/1‑133 (MQ=255) aCCTTGTGGGCTAAATTAAGGAGCAGATCATCAACGACAGCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAAGAGGCCAGGACAggaga < 8:166085/149‑4 (MQ=37) ccTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCa > 7:169447/1‑138 (MQ=255) ccTGGTGGCCTACAGCAAGGAGCACATCATCACCGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCa < 8:169447/138‑1 (MQ=255) cTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCg < 5:72521/149‑1 (MQ=255) tggtggGCTACAGAAAGGAGCATATAAGCACCCACATCCTCGACCTGTCCGAGCGGCAATTGCAGAACCTGCACCTGGT‑CCGCTTACAATGCTCTCGTGTCCTGGCCTCTTCGGGGGCTTGCCGGCTAAGAGGCCA‑GACAGGCAACCGc < 4:221071/149‑1 (MQ=255) gCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGaaa < 4:46317/149‑1 (MQ=255) cTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAg > 8:18206/1‑149 (MQ=255) aGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGCAGAGGCCA‑GCCAGGCAACCGCGAGAAAGGTGc > 5:245903/1‑149 (MQ=255) aGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTg > 7:201355/1‑148 (MQ=255) ggAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATccc > 4:330162/1‑149 (MQ=255) cAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAg > 7:271434/1‑149 (MQ=255) atcaACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGt < 3:316954/149‑1 (MQ=255) aaCGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGc > 2:273989/1‑149 (MQ=255) ccGACTTGCTCGACCAGTACGAGCTGCACTTGCTGTACCGGCACCTGGT‑CCGCTGACCATGCTCTCCTGTCGTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGcc < 8:271434/148‑1 (MQ=255) aCGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGcc > 4:252933/1‑149 (MQ=255) aTCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTg < 6:161414/149‑1 (MQ=255) aTCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTg < 3:330892/149‑1 (MQ=255) cTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAaga > 1:167450/1‑93 (MQ=255) cTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAaga < 2:167450/93‑1 (MQ=255) cTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCAt < 1:49569/149‑1 (MQ=255) cTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCAt > 2:49569/1‑149 (MQ=255) ccAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCAccc < 2:224179/149‑1 (MQ=255) cGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCTAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCgg < 8:201355/148‑1 (MQ=255) cGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCgg < 3:71013/148‑1 (MQ=255) gCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTtcg < 5:289820/149‑1 (MQ=255) gCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTtcggtc > 8:94569/1‑149 (MQ=255) gTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACccgcc < 4:22430/131‑1 (MQ=255) gTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACccgcc > 3:22430/1‑131 (MQ=255) gTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAatcat > 1:271275/1‑149 (MQ=255) tACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAg > 4:84904/1‑76 (MQ=255) tACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAg < 3:84904/76‑1 (MQ=255) cTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCAc > 1:333511/1‑149 (MQ=255) cACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGc < 7:94569/149‑1 (MQ=255) cTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCaa > 6:98274/1‑148 (MQ=255) cTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCaa > 8:12924/1‑148 (MQ=255) ggccGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCaaaa < 6:174800/145‑1 (MQ=255) gACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGt > 6:304312/1‑148 (MQ=255) cAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCAcg < 3:252933/149‑1 (MQ=255) aaGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGGTCGGTCGGTAATCATCCACCGCAAAATGAAGGGTGAcgc > 8:144686/1‑149 (MQ=255) aGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCAcgcg > 2:136763/1‑149 (MQ=255) gCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCgg < 5:98274/149‑1 (MQ=255) tcctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGt > 3:61679/1‑149 (MQ=255) tcctgGCCTCTGCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTccc < 6:245903/147‑1 (MQ=255) tgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAAc > 4:176172/1‑149 (MQ=255) gCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAAc < 2:333511/147‑1 (MQ=255) gCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGc > 2:55408/1‑149 (MQ=255) ctctTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCa > 8:1673/1‑149 (MQ=255) ctcctcGCGGGCTCGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCa < 8:145333/149‑1 (MQ=255) cctttCGCGGGCTTCCCCGCTATGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCa < 1:176539/146‑1 (MQ=255) tctTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTcc < 6:57861/138‑1 (MQ=255) tctTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTcc > 5:57861/1‑138 (MQ=255) tctTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCAc > 6:157781/1‑149 (MQ=255) tctTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCAc > 5:321345/1‑149 (MQ=255) tctTCGCGGGCAAGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCAc > 3:45236/1‑149 (MQ=255) ttCGCGGGCAAGCCCGCGAAGAGGCCAGGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATAATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACg > 1:277287/1‑149 (MQ=255) tCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGt > 3:1135/1‑148 (MQ=255) cgcgGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGt < 4:61679/147‑1 (MQ=255) gcgGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCa < 1:273989/148‑1 (MQ=255) gcgGGCAAGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCa < 4:45236/148‑1 (MQ=255) cgGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCAtt < 7:18206/149‑1 (MQ=255) | AGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGT‑CCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATT > NC_002947/284443‑284729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |