Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,570,560 | G→C | 7.1% | A102G (GCC→GGC) | sad‑II ← | NAD+‑dependent succinate semialdehyde dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,570,560 | 0 | G | C | 7.1% | 172.7 / 3.9 | 56 | A102G (GCC→GGC) | sad‑II | NAD+‑dependent succinate semialdehyde dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (25/27); new base C (2/2); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 |
AGAATCGCCGGCACGGCGCCGCGCAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTACTCGCTGCG > NC_002947/3570413‑3570705 | aGAATCGCCGGCACGGCGCCGCGCAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGc < 5:133823/149‑1 (MQ=255) ccGGCACGGCGCCGCGCAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAg > 1:13135/1‑149 (MQ=255) ccGGCACGGCGCCGCGCAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGCCGAGCACGGCCCGGCCATGCTCGCCgccgagc < 3:71180/149‑7 (MQ=39) cGGCACGGCGCCGCGCAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGc < 1:171334/149‑1 (MQ=255) cGGCACGGCGCCGCGCAGCACCTAACAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGc > 7:56467/1‑149 (MQ=255) ggCGCCGCGCAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCaaa < 1:336177/149‑1 (MQ=255) ggCGCCGCGCAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCaaa < 1:8975/149‑1 (MQ=255) gcgcAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGTCTa < 2:184761/149‑1 (MQ=255) cgcAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTac < 7:224816/149‑1 (MQ=255) gcagcaCCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTaca > 5:237995/1‑149 (MQ=255) gcagcaCCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTaca > 4:191078/1‑149 (MQ=255) cAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGAc < 2:13135/149‑1 (MQ=255) gggAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCAcc > 3:277935/1‑149 (MQ=255) aGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGa < 4:184462/149‑1 (MQ=255) ggCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGc < 3:186789/149‑1 (MQ=255) gCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGc > 1:349611/1‑148 (MQ=255) ggCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCt < 3:191078/149‑1 (MQ=255) ccAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTg > 3:169616/1‑149 (MQ=255) cAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGc < 7:126095/149‑1 (MQ=255) cccAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCTTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTcgcg < 4:371764/149‑1 (MQ=255) ccAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCgg < 1:198646/149‑1 (MQ=255) ccAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCgg < 6:241599/149‑1 (MQ=255) gggcggTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGAt < 7:154960/149‑1 (MQ=255) tATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGCCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCAtgtg > 3:270955/1‑149 (MQ=255) cGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTgcgc < 8:56467/148‑1 (MQ=255) gATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGcgcg > 2:277885/1‑148 (MQ=255) tACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGaaa < 4:277935/149‑1 (MQ=255) gggCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCt > 2:283406/1‑149 (MQ=255) gggCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCt > 2:115113/1‑149 (MQ=255) cTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCa < 2:349611/149‑1 (MQ=255) cTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCa < 1:277885/149‑1 (MQ=255) cTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCa < 4:116175/149‑1 (MQ=255) gACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTgg > 6:76606/1‑149 (MQ=255) gACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTg < 6:237995/148‑1 (MQ=255) tcggcGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGc > 5:51357/1‑125 (MQ=255) tcggcGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGc < 6:51357/125‑1 (MQ=255) tcggcGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTc > 1:176188/1‑149 (MQ=255) tcggcGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGACGGTGTc > 3:16144/1‑149 (MQ=255) tcggcGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTACGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTc > 4:216608/1‑149 (MQ=255) gccgAGCACGGCCCGGCCATGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCggc > 8:31829/3‑147 (MQ=255) cgAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCggccagg < 3:307019/149‑1 (MQ=255) gAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATATCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCggccaggg > 4:268803/1‑149 (MQ=255) gAGCATGGCCGGGCCGTGCTCGCCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGa < 5:28430/134‑1 (MQ=255) gAGCATGGCCGGGCCGTGCTCGCCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGa > 6:28430/1‑134 (MQ=255) cATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCggccagggc > 7:92327/1‑147 (MQ=255) ggcccggccaTGCTCGCCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCggccagggccag > 4:187845/1‑147 (MQ=255) gccgggccgTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCcagcag > 5:319649/1‑149 (MQ=255) gccgggccgTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCcagca < 4:169616/148‑1 (MQ=255) ccgggccgTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAgg < 2:27232/149‑1 (MQ=255) gagccgTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTa < 5:262489/147‑1 (MQ=255) gCTCGGCGTACCAGCGGCAAAGGCCTACACTCTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTACTcgctg > 1:31864/1‑149 (MQ=255) gCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTACTcgctg > 6:227925/1‑149 (MQ=255) cTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTAc < 7:62719/142‑1 (MQ=255) cTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTAc > 8:62719/1‑142 (MQ=255) cTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTACTcgctgc > 3:255426/1‑149 (MQ=255) tCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTACTcgctgcg > 3:302747/1‑149 (MQ=255) | AGAATCGCCGGCACGGCGCCGCGCAGCACCTGCCAGACCGGGAAGTTCCACGGCATCACGGCCAGGATCGGGCCCAGCGGGCGGTATTCGATACGGGCTTTTTCGACCTGGGTCGGCTCGGCGGCGAGCATGGCCGGGCCGTGCTCGGCGTACCAGCGGCAAAGGCCTACACACTTGCTGACTTCACCGCGAGCCTGGGCGATCGGCTTGCCAATTTCGCGGCTGATCATGTGCGCGAAAGCTTCAGCCTTGGCTTCGAGGGTGTCGGCCAGGGCCAGCAGGTACTCGCTGCG > NC_002947/3570413‑3570705 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |