Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,766,263 | G→A | 9.8% | Q198Q (CAG→CAA) | PP_5599 → | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,766,263 | 0 | G | A | 9.8% | 167.9 / 7.1 | 61 | Q198Q (CAG→CAA) | PP_5599 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (25/30); new base A (2/4); total (27/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.85e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.56e-01 |
CGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCTGTTGTCCCACTCTGGGCGGGATTGAAGACTGACGACC > NC_002947/3766119‑3766408 | cGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTg < 5:305825/149‑1 (MQ=255) aaaaGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCcagca < 2:265676/149‑1 (MQ=255) aaaaGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCcag > 6:297192/1‑147 (MQ=255) aaaaGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAATCTGCCcaccc < 6:151658/149‑4 (MQ=255) aaaaGCATTCGTATACAGGTTCTTCGAGAAGAACAACTGATGCTTTTGACCAAAGCCCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATCACTAACATGACTGGGCTGGGCAGATTGCCcag > 4:333445/1‑147 (MQ=255) aaGCATTCGTATACAGGTTCTTCGAGAAGACCCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAATCTGCCcacccca < 4:219399/149‑6 (MQ=255) aTTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAACGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAATCTGCCcaccc < 6:183739/143‑4 (MQ=255) aTTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGAtt > 8:133843/1‑135 (MQ=255) aTTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGAtt < 7:133843/135‑1 (MQ=255) aTTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAATCTGCCcaccc > 5:189149/1‑140 (MQ=255) aTTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAATCTGCCcaccc < 6:189149/143‑4 (MQ=255) aTTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAATCTGCCcaccc > 5:183739/1‑140 (MQ=255) cGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaa > 2:6319/1‑149 (MQ=255) gTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaat < 5:368286/149‑1 (MQ=255) gTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaat > 4:132488/1‑149 (MQ=255) tataCAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaat > 7:135087/1‑148 (MQ=255) ataCAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaatga > 4:124613/1‑149 (MQ=255) ttcttcGAGAAGAACCCCTGATTCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaatgacaatgac < 5:252003/149‑1 (MQ=255) tcgaagaaCCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaatgacaatgac > 4:196104/3‑143 (MQ=255) tcgaagaaCCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaatgacaatgac < 3:196104/141‑1 (MQ=255) gagaAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCa < 3:132488/148‑1 (MQ=255) aaCCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGAt < 1:180916/149‑1 (MQ=255) aCCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGAt < 3:15937/148‑1 (MQ=255) cTGATGCTTTTGAACAAAGACCCCGTTGACAAGCGCGACATCCGCTCGTCGATTCTTGGTAGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCct < 3:333445/149‑1 (MQ=255) gATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCctct > 4:114309/1‑149 (MQ=255) aTGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCctct < 6:230978/148‑1 (MQ=255) aTGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCctct < 1:180105/148‑1 (MQ=255) aTGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTg < 3:334069/149‑1 (MQ=255) ccAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGAt > 2:131908/1‑149 (MQ=255) ccccGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTgg < 7:74229/149‑1 (MQ=255) ccGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTg > 3:58065/1‑130 (MQ=255) ccGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTg < 4:58065/130‑1 (MQ=255) gTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGc < 7:258467/149‑1 (MQ=255) gACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTa < 2:36332/148‑1 (MQ=255) aCAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATc < 6:343787/149‑1 (MQ=255) cAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCt < 5:297192/149‑1 (MQ=255) gcgcGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTAca > 3:355415/1‑149 (MQ=255) cgcgACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTAcat < 1:6319/149‑1 (MQ=255) gcgACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTAcat > 2:35581/1‑148 (MQ=255) cgACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGcc < 4:348625/105‑1 (MQ=255) aCATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATg < 4:355415/149‑1 (MQ=255) aTCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGt > 1:322962/1‑149 (MQ=255) tCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTc < 3:114309/149‑1 (MQ=255) tCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTc > 1:123013/1‑149 (MQ=255) cgaTTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGc < 2:183187/149‑1 (MQ=255) gaTTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCa > 7:98276/1‑149 (MQ=255) cTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATgg < 3:124613/148‑1 (MQ=255) ttGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATc > 8:304351/1‑122 (MQ=255) ttGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATc < 7:304351/122‑1 (MQ=255) ggTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATgggg < 1:35581/147‑1 (MQ=255) gTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGgtg > 8:28968/1‑149 (MQ=255) tCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGgtgt > 7:58532/1‑149 (MQ=255) gAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCAATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCt > 5:83145/1‑149 (MQ=255) aCCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCtgtt > 6:357380/1‑149 (MQ=255) ccTTATTAGATATGACTCACATGCCTGGGGGGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCtgttg < 5:22790/149‑1 (MQ=255) gACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCTGTTGTCCCACTCTGGGc > 8:138527/1‑149 (MQ=255) tCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATCGTCGCCAAAGGCATGGGGGTGTCTGTTGTCCCACTATGGGCgg > 3:291225/1‑148 (MQ=255) acaTGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCTGTTGTCCCACTCTGGGCGGGAt > 1:147382/1‑149 (MQ=255) ccTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCTGTTGTCCCACTCTGGGCGGGATTGaa < 1:248583/148‑1 (MQ=255) ccTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCTGTTGTCCCACTCTGGGCGGGATTGaa < 1:131908/148‑1 (MQ=255) gCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCTGTTGTCCCACTCTGGGCGGGATTGAAGACTGACGAcc > 1:366907/1‑149 (MQ=255) | CGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGGATGCGCTGGATGCTATCTACATCATGGTCGCCAAAGGCATGGGGGTGTCTGTTGTCCCACTCTGGGCGGGATTGAAGACTGACGACC > NC_002947/3766119‑3766408 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |