| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,896,098 | C→A | 6.7% | R216L (CGG→CTG) | PP_3439 ← | AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,896,098 | 0 | C | A | 6.7% | 227.1 / 5.0 | 74 | R216L (CGG→CTG) | PP_3439 | AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (31/38); new base A (3/2); total (34/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.48e-01 | |||||||||||
AGGAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGGCGCGTAT > NC_002947/3895950‑3896246 | aGGAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGccc > 8:77864/1‑149 (MQ=255)aGGAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGccc > 3:79989/1‑149 (MQ=255) gcgcCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGc < 4:159720/149‑1 (MQ=255) gcCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑Ca < 7:33167/149‑1 (MQ=255) cccAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAg > 5:100946/1‑149 (MQ=255) ggCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGc < 5:99593/149‑1 (MQ=255) ggggCATTACAGAAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTg > 6:89396/3‑149 (MQ=255) cGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTgg < 7:77864/149‑1 (MQ=255) ggCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGt > 5:256636/1‑149 (MQ=255) gCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTc < 5:354023/149‑1 (MQ=255) gCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTc < 3:340690/149‑1 (MQ=255) cATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTc > 8:338172/1‑148 (MQ=255) tCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGc < 6:100946/148‑1 (MQ=255) cTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCa < 3:158634/148‑1 (MQ=255) tGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAgg > 2:193067/1‑149 (MQ=255) ccccGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCAt < 4:362574/149‑1 (MQ=255) cccGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAG‑AGGTAGCCATgc > 4:291139/1‑149 (MQ=255) ccGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATgc > 7:214574/1‑149 (MQ=255) gtgtCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATgcggc < 4:79989/149‑1 (MQ=255) cgccgcCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGt > 4:28324/1‑147 (MQ=255) gccgccAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCa < 4:330505/148‑1 (MQ=255) ccgccAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAgg > 7:29392/1‑149 (MQ=255) ccgccAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAgg > 8:12438/1‑149 (MQ=255) ggTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAg < 8:170754/149‑1 (MQ=255) tGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCg > 7:95082/1‑149 (MQ=255) gCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGa < 1:148280/144‑1 (MQ=255) gCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGt > 6:249726/1‑149 (MQ=255) tGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTg > 4:298120/1‑149 (MQ=255) tttGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTgg < 5:89396/148‑1 (MQ=255) tttGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGc > 5:89554/1‑149 (MQ=255) tttGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGc > 5:94812/1‑149 (MQ=255) ttGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGc > 1:18075/1‑148 (MQ=255) ttGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGc > 1:241489/1‑148 (MQ=255) ttGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGc > 1:23880/1‑148 (MQ=255) aTGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGaaa < 7:317733/148‑1 (MQ=255) tGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAgg < 1:374319/149‑1 (MQ=255) tGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAgg < 3:28324/149‑1 (MQ=255) ccGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCAc < 8:95082/149‑1 (MQ=255) cAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAAt > 3:170995/1‑147 (MQ=255) ggTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAG‑AGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGt < 3:291139/149‑1 (MQ=255) gtgtGCCTGATCAGCGAACCCGGCCTCCTTTGCAACTTAAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGt < 8:104709/149‑1 (MQ=255) gtgtGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGt < 5:249726/149‑1 (MQ=255) ccTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCTCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGAc < 3:203854/149‑1 (MQ=255) ccTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTgg > 8:255556/1‑125 (MQ=255) ccTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTgg < 7:255556/125‑1 (MQ=255) cAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCgaga > 2:270742/1‑148 (MQ=255) aGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGaaa < 4:342058/123‑1 (MQ=255) aGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTACGACCGAGACa > 3:2918/1‑149 (MQ=255) tcctGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGcccc > 3:369461/1‑149 (MQ=255) cctGTGGAACATCAGAAATTGAGCGGCCCTGGCGCAACTGCGACCGGGA‑CAGTTTCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGATGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCg > 2:142844/1‑149 (MQ=255) cctGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCg > 4:212367/1‑149 (MQ=255) tgtgCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCg > 5:229913/1‑147 (MQ=255) tgCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGTGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCa < 1:270742/147‑1 (MQ=255) tgCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCa < 8:214574/147‑1 (MQ=255) ttCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCa < 2:338425/70‑1 (MQ=255) ttCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCa > 1:338425/1‑70 (MQ=255) aGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAg < 2:37626/112‑1 (MQ=255) aGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAg > 1:37626/1‑112 (MQ=255) aGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGa < 7:338172/149‑1 (MQ=255) aGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGa < 4:369461/149‑1 (MQ=255) gCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGt < 8:29392/149‑1 (MQ=255) gCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGt < 2:23880/149‑1 (MQ=255) gCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTGGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGt < 2:18075/149‑1 (MQ=255) cccGGGCGCAGTTGCGCCAGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGAAAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGt > 6:86928/1‑148 (MQ=255) ccgggCGCAGTTGCGCCAGGGC‑CGGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCa > 6:326004/4‑149 (MQ=255) ccgggCGCAGTTGCGCCAGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTa > 6:262141/4‑97 (MQ=255) ccgggCGCAGTTGCGCCAGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTa < 5:262141/94‑1 (MQ=255) gtgcAACTG‑GCCCGGGCGCAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGTGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGc > 8:19128/3‑149 (MQ=255) gcgcAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACt < 4:2918/147‑1 (MQ=255) gcgcAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACt < 4:170995/147‑1 (MQ=255) gcgcAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGc > 2:376446/1‑149 (MQ=255) cgcAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCg < 7:12438/149‑1 (MQ=255) cagttGCGCCAGGGC‑CGGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGAt < 5:326004/145‑1 (MQ=255) tGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGaaa > 2:180785/1‑71 (MQ=255) tGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGaaa < 1:180785/71‑1 (MQ=255) cgcCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGGATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGgcgc < 1:193067/149‑1 (MQ=255) ccGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGGCGCGTa > 4:248503/1‑149 (MQ=255) cGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGGCGCGTAt < 2:241489/149‑1 (MQ=255) cGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGGCGCGTAt < 3:212367/149‑1 (MQ=255) cGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGGAGGACCGAGACAGGCCGCAAGCCCCGGAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGGCGCGTAt < 6:256636/149‑1 (MQ=255) | AGGAGCGCCCAGGCTAGCGACGGCATTTCTGTAATGCCCCGGTGTCGCCGCCAGGTGCTGTTTGAATGCCCGCTGCAGGTGTGCCTGATCAGCGAACCCGGCCTCCTGTGCAACTTCAGCAATTGAGCGGCCCTGGCGCAACTGCGCCCGGGC‑CAGTTGCACGCGCTGGTCTAGCAGGTAGCCATGCGGCGTCAGGCCGAAGCGTTGGCGAAAGGCACGAATCAGGTAGGACCGAGACAGGCCGCAAGCCCCGCAGATGTCCTCGAGGCTGAGCGGGTCACTGCGATGGGCGCGTAT > NC_002947/3895950‑3896246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |