| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,951,159 | 0 | T | C | 100.0% | 66.1 / NA | 22 | intergenic (‑123/+72) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (15/7); total (15/7) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCTTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGG > NC_002947/3951024‑3951300 | tCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTTCGTCGCGAAACGGCTTCGCAGCAGCCCCCGCAGTGGCCGCGCAAGCGCAGAAACAGGGGGGCCCTGCGCGCTCCGTTCGCGACGc > 7:98639/1‑147 (MQ=255) cTGTGGGAGCGGCCTTTAGTCGCGAAAGGGCTTCGCAGCAGCCCCGGCAGTGGGAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGGTCCTTTAGCGACACCAGGCCCCTCCCACAAAAACGGAAGCCACAGAG‑‑‑CGCAAATACCCaag > 2:281028/1‑147 (MQ=255) ccTTGCGTCGCGAAAGGGCTGCGCAGCAGCCACGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATa > 3:183013/1‑149 (MQ=255) gCGTCGCTAATGGGCTGCGCAGCCGCCCCGGCAGTGGCAGCTCAAGCGCAGAACGAGGGTCGCGCTGCGCGCTCCTTTCGCTACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACt < 7:262231/147‑1 (MQ=255) tCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCaccg > 3:319908/1‑149 (MQ=255) gcgAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCaccgac > 7:76154/1‑149 (MQ=255) acgggCTGCGCACCACCCCCGGCTGTGGCAGCTCAAGCCCACAACGCGGGCCGCGCTGCGCGCTCCTTTCGCGACGAAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCaccgaccg < 1:55814/145‑1 (MQ=255) gCTGCGCAGCAGCCCGGGCTGTGGCAGCGCAAGCGCATAAAGCGGGTCGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGc < 5:97770/149‑1 (MQ=38) gcagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGt > 8:111308/1‑149 (MQ=255) ccccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCaa > 7:70100/1‑148 (MQ=255) cAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCAGGGGGGGAGGGATTTCAGGAAGCGGCCCATGATACTAACCGACCCGCCAGCGGCAGGGTCAAAAGCTTCATg > 1:307951/1‑149 (MQ=19) tCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTggg > 4:210913/1‑149 (MQ=255) gcgcAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAAt > 4:2402/1‑149 (MQ=255) aGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGa > 2:260402/1‑94 (MQ=255) aGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGa < 1:260402/94‑1 (MQ=255) aGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgcc < 3:210913/149‑1 (MQ=255) aGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgcc > 2:69184/1‑149 (MQ=255) cgaaaggAGCGCGCAGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTg > 2:61522/6‑149 (MQ=255) gagGGTAGCGCTGCGCGCTCCTTTCGCTACGAAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTgg < 1:281028/149‑1 (MQ=255) ggAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGt < 3:2402/149‑1 (MQ=255) gAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTg > 4:289278/1‑149 (MQ=255) cgcgcTCCTTTCGCGACGCAAGGCCGCTCCGACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCggg > 5:119626/1‑149 (MQ=255) | TCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCTTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAG‑‑‑GCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGG > NC_002947/3951024‑3951300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |